BAC Information

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BAC

Clone NameMSMg01-404F03
Chromosome10 (Build37)
Map Location 53,395,318 - 53,395,837
singlet/doubletsinglet
Overlap gene4930589M24Rik
Upstream geneSlc35f1, Pln, EG432460, Mcm9, Asf1a, LOC100042554
Downstream geneMan1a, LOC100041898
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404F03.T7 (MSMg01no404_f03.b1)MSMg01-404F03.TJ (MSMg01no404_f03.g1)
ACCAG503017AG503018
length754749
length of high quality
(start - end)
524 (58 - 581)520 (65 - 584)
definitionCHROMAT_FILE: MSMg01no404_f03.b1 PHD_FILE: MSMg01no404_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:57 2005CHROMAT_FILE: MSMg01no404_f03.g1 PHD_FILE: MSMg01no404_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAATT
ATTTACTACTGAATGGCTGAGAAGCACCTGAAAAAACCTTCAACATTCTT
AATAATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCTACCTGACAC
CAGTCAGAATGGCTAAGATCAAAGCTTCAGATGACAGTAGATGCTGGTGA
AAATGTGGAGAAAGAGAAACACTCCTCCATTGTTGGTGGGATTGCAAGCT
GGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAACTGACAT
AGTACTACCAGAAGATCCAGCAATACCACTCCTGGGCATATACCAAGAAG
ATGTTCCAACTTGTAATAAGGACACATGCTCCACTATGTTCATAGCAGCC
TTATTTATAATAGCAAGAAACTGAAAATAAACCATATGTTCCTCAACAGA
GGAATGAATACAGAAATTTGGTATATTTACACGATGGAGTACTATTCTGA
TATTAAAATTAATGAATTTATGAAATTCCTAGGCAAATGGATGGAACTGG
AGGATATCACCCTGAGTGAGATAAACCACTCACAAAAGAACACACATGAT
ATTCACTCACTGATAAGTGGATATTAGCTCAAAAACTTAGAATATTCACG
TTACAATTTGCAAAACACCTGAAAACTCAAGAAGAAGAAAGACCAAAGTG
CGGATACTTCGATCCCTTCTTAGAAAGGCGAAATAAATAACCTATGGTAC
AATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTATTCTTGTTGAAAATCAGGCTACCTATGTACAAT
CAACATGATTAAAGGGATGATAAAGAATTTAAGTTGACTGGATGTTTTTC
TTACGTAACTTGAAACCACATGCCCCTGCTCTTAGCATTATGATAATGAC
ATGGCCCTTGAGAAATCCTTGCAGATTGGCATATATCAAGTGATTCCCTG
GATCCTGTGGCTGGAAGTGACTATCTGGACAAGAGCGCCAATGATGACCC
ACTCTGGGTGCTGTGGCTGCCCAAGAGCACCTGGCAAACAGGAACAGGCA
CTGGGCTAGCCTTTAGTCACTATGATGTTTTTTTTGGGAACAGCACAGGG
TAAAGCAGTTTTAAAGGTTATTTTTCATATTGAAACCCCCACAGGACATT
GTTGACTTGGCTAACTAATTACCAAGCTGAACTCAGGCACATGTTCTTGC
TCAACACTCAGCCTTTAGGAACCATCTTTCCACAACAGCTAGCACCAAAC
ATTAATTTAACTATACTTAAAGCATTTCCTATTTAAGGAAATTCTGCATT
AAGATTTATTTTTAATTATGTCTATGTGTGCATATCTATGTGGTGGCATG
CGCATGTGAATGCAGATGGCCCCCCAGGACAGACCTATCCCATGTCCCCT
GAGGTGGGAATACCGGATGAAACCCCCCAAAGTTTAGAAAAAGGCGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_f03.g1 MSMg01no404_f03.g1 CHROMAT_FILE:
MSMg01no404_f03.g1 PHD_FILE: MSMg01no404_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:57 2005
         (520 letters)



>mm_chr10_53395118_53396037
          Length = 920

 Score =  967 bits (500), Expect = 0.0
 Identities = 515/520 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattcttgttgaaaatcaggctacctatgtacaatcaacatgattaaagggatgataaa 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ttattcttgttgaaaatcaggctacctgtgtacaatcaacatgattaaagggatgataaa 260

                                                                       
Query: 61  gaatttaagttgactggatgtttttcttacgtaacttgaaaccacatgcccctgctctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatttaagttgactggatgtttttcttacgtaacttgaaaccacatgcccctgctctta 320

                                                                       
Query: 121 gcattatgataatgacatggcccttgagaaatccttgcagattggcatatatcaagtgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcattatgataatgacatggcccttgagaaatccttgcagattggcatatatcaagtgat 380

                                                                       
Query: 181 tccctggatcctgtggctggaagtgactatctggacaagagcgccaatgatgacccactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccctggatcctgtggctggaagtgactatctggacaagagcgccaatgatgacccactc 440

                                                                       
Query: 241 tgggtgctgtggctgcccaagagcacctggcaaacaggaacaggcactgggctagccttt 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tgggtgctgtggctgcccaagagcacctagcaaacaggaacaggcactgggctagccttt 500

                                                                       
Query: 301 agtcactatgatgttttttttgggaacagcacagggtaaagcagttttaaaggttatttt 360
           |||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 agtcactatgatgggttttttggggacagcacagggtaaagcagttttaaaggttatttt 560

                                                                       
Query: 361 tcatattgaaacccccacaggacattgttgacttggctaactaattaccaagctgaactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatattgaaacccccacaggacattgttgacttggctaactaattaccaagctgaactc 620

                                                                       
Query: 421 aggcacatgttcttgctcaacactcagcctttaggaaccatctttccacaacagctagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggcacatgttcttgctcaacactcagcctttaggaaccatctttccacaacagctagca 680

                                                   
Query: 481 ccaaacattaatttaactatacttaaagcatttcctattt 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaaacattaatttaactatacttaaagcatttcctattt 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)