BAC Information

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BAC

Clone NameMSMg01-404I13
Chromosome10 (Build37)
Map Location 79,432,184 - 79,432,624
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18
Downstream geneGrin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404I13.T7 (MSMg01no404_i13.b1)MSMg01-404I13.TJ (MSMg01no404_i13.g1)
ACCAG503179AG503180
length770795
length of high quality
(start - end)		441 (71 - 511)276 (66 - 341)
definitionCHROMAT_FILE: MSMg01no404_i13.b1 PHD_FILE: MSMg01no404_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:14 2005CHROMAT_FILE: MSMg01no404_i13.g1 PHD_FILE: MSMg01no404_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCCAAACGACACCTATTTCGNAAAATGCGCGGAANTCTCTAGTT
TTCCATAAAGAACACTCAGNGTTGGTGCTAGGAACCAAATCGAGTTCTTT
ACAAAAGCAGTCTGAACCAACCATGGAGAAATCTTTCTGCTTTCCAGAAC
TCTTCTTCACCCTTCAAAACCCAGGATCAAATGTCCTGCTGAAAACCACG
GCCACCCAGACCGTGCATCACATCCCTCTCATGTGCTCGACTTCCTATGG
ACTCATTTAGTGACCACTGCCCCTGTCAGTTCAGGGAGCACAAGGGCAGA
CGCTGCCCTCTTGTGTCTCAGGACTTACATTACAATAGGCACTCTATAAT
TGTTCTGGAACCTTCTACAGCTCCCAGTTGTCCAGGTCCCCCAACTCAAC
TGACTCAGAACCCGGTTCACTTGTTATCCCAAACGTGGCCTGTAGGATCA
GGGAACAGAGGCTTCCCCAGCCAGGAGGCTCCTGCTGGGAATTCTGAGGT
CTGTCCTCACAGACGCTCTGGAAGATGCTCTGGAAGATACTCTGGAATAT
GTGGTATTTCCCTCAAATTCTGCACTGCAGATGCCTGCATGGAACACTCA
CCCCTGAAGAATGAATCTATCCCTGGTAAGGTTCTCCCTCCCCCCCCCAA
AACTCTTTTTTTCCCGCGAACCCCAATTTCCACCCTAAAAATACATTCTT
TCTTGCTAATAATAAACCACTTAACAAGTTATTTTCTTTTTACCCCGGCC
CTTATAATATCCGCCCTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAGGTGATTCCCTTTTCAGCTGCCCAGCTATTTCA
AGGTGCCTGGACCACGAGAAACCCACTTTACTTAAGAGAAATAGAGGGGG
CCAAGTGGTGGGGCACACCTTTAATCCCAGTGCTTGGGAGGCAAAGGCAG
GCAGATTTCTGAGTTCGAGACCAGCCTGGTCTACAAAGTGAGTTCCAGTA
CAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAGCAAACAGATAGACA
GACATGGATGGATGTATGGATGGATGGATGGATGGATGNNNNNCCCCNCC
TTTTTTTCCTCCTTACTTATTTTCCCCCCTCATCTCCCATATCCCCTCTC
TCCCCCATCCCTTACCTCAATTATACTCCCTTTTTATTCCCCCTTCTACT
TTTTTTATATTTATCCCCTCCCTCCCTCTCCCCTTCTCTTTTATTCCCCT
CCTCTTCCTCCTTTCTTTCTATCTCTCCTTTTCTTGTTTTTATTTCCTCC
CCTCCCCATTCTCTTTTTTTTCTCCTTGTTTCCTTTCTTATTACCCTCTC
TCTTCTCTCTTTTATTCTCCCCCCCCTTCATCTATATTTTTCTTTTATCC
CCCTCCCCCTTCATTTACTGCCCCTTTTTCTTTTTATATTTCTTTCCCTC
TTTTTCATACTATATTTTTCTCATTCCCTTCTCATTTACTTTACATTCTC
TCTCTCTCCTTTCTCTTCCTCCCCCTCTAATCAATACTATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_i13.b1 MSMg01no404_i13.b1 CHROMAT_FILE:
MSMg01no404_i13.b1 PHD_FILE: MSMg01no404_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:14 2005
         (441 letters)



>mm_chr10_79431984_79432824
          Length = 841

 Score =  822 bits (425), Expect = 0.0
 Identities = 437/441 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttggtgctaggaaccaaatcgagttctttacaaaagcagtctgaaccaaccatggagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gttggtgctaggaaccaaatcgagttctttacaaaagcagtctgaaccaaccatggagaa 582

                                                                       
Query: 61  atctttctgctttccagaactcttcttcacccttcaaaacccaggatcaaatgtcctgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 atctttctgctttccagaactcttcttcacccttcaaaacccaggatcaaatgtcctgct 522

                                                                       
Query: 121 gaaaaccacggccacccagaccgtgcatcacatccctctcatgtgctcgacttcctatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaaaaccacggccacccagaccgtgcatcacatccctctcatgtgctcgacttcctatgg 462

                                                                       
Query: 181 actcatttagtgaccactgcccctgtcagttcagggagcacaagggcagacgctgccctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 actcatttagtgaccactgcccctgtcagttcagggagcacaagggcagacgctgccctc 402

                                                                       
Query: 241 ttgtgtctcaggacttacattacaataggcactctataattgttctggaaccttctacag 300
            || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctgggtctcaggacttgcattacaataggcactctataattgttctggaaccttctacag 342

                                                                       
Query: 301 ctcccagttgtccaggtcccccaactcaactgactcagaacccggttcacttgttatccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctcccagttgtccaggtcccccaactcaactgactcagaacccggttcacttgttatccc 282

                                                                       
Query: 361 aaacgtggcctgtaggatcagggaacagaggcttccccagccaggaggctcctgctggga 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 281 aaacgtggcctgtaggatcagggaacagaggctgccccagccaggaggctcctgctggga 222

                                
Query: 421 attctgaggtctgtcctcaca 441
           |||||||||||||||||||||
Sbjct: 221 attctgaggtctgtcctcaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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