BAC Information

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BAC

Clone NameMSMg01-405B13
Chromosome10 (Build37)
Map Location 122,832,335 - 122,832,839
singlet/doubletsinglet
Overlap geneAI851790
Upstream geneAvpr1a, Ppm1h, D630033A02Rik, Mon2, Usp15, LOC100042958
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405B13.T7 (MSMg01no405_b13.b1)MSMg01-405B13.TJ (MSMg01no405_b13.g1)
ACCAG503608AG503609
length748750
length of high quality
(start - end)
503 (82 - 584)365 (79 - 443)
definitionCHROMAT_FILE: MSMg01no405_b13.b1 PHD_FILE: MSMg01no405_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:59 2005CHROMAT_FILE: MSMg01no405_b13.g1 PHD_FILE: MSMg01no405_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNN
GNGGAATTCTCCCTTTTACTGTTTCCCTACAATCCACTCTCTACGGAATA
GTTGAAATCACCTTTTAAGTATGATAATGACATCCTGCCTTTCTCCTTTT
CAAATGCTTTCCGTGTCTCCTCATGAAGACCCACTCGCCCTGTTCAGGTC
CTTGAAGCCCTTCACTATTCACATCAGCCTGTCCTCCCTGAGCCTGTTTC
CTGATCTCCCTTCTCCCTTCTCTTGCCACCTGCTGAATTTCTTCCTGTCT
AGGACGCACTCCCTCTAGTGCATGTTTCCTTGCATTCCAATTTTAGCCTA
AATGTCACCTTCCCGGTGCTGGGTCCCGCTGCTTCCAGTCACACTGTTAC
TCTCAGTCTGCTGCTGTTTCTCATCCTCCAAGCGTCAAACAGGATGTCTG
CGCATCCTCCTCGTCCGTTTCTATAGCAATGTTGAAATACGGTTAACAAA
TGTTTGTGGAAGGGTTTTTCTTGGTGTGCCATGTTTTATGAAAATTCATT
TTAAAATTTAGCTCACAAAGCAACGAATTTCATTGTGGCCTTTTGTATGC
ATCTGTAATTATCCTCCTCCGTCCTCACTCCACCCACCCCCATCTTTCTG
GCTCCATTCTCCATCTCCAATAGTCCTCCCTTTCGTTTGGTATCGTTTGC
CTTCCTTCTTTTTTCCATCATGCCTCCCTCCCTTAATAACTCTTTGGN
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTCCCTTCGGGGCCCTCAA
TCCTTCCTTCATCTCTTCCATAAAAGTCTCCAAGCTCCATCAGAAGCTTG
GCTGTGGGTGTTGGCATCTGTCTGAGTCAAGTGCTAGGTAGAACCTCTCA
GAAAACAGCCATTCTAGGGTGGACCTAGATCCCCACACATATGTGAGAGA
TATGTAACTCTTCTTCATGTATTCCCTGAACAATGGCAGAGGGGATATCC
CTAAAGCTCTTACCTCTCTATGGAATCTATTCCCCTAACCCAGCTATCTT
GTCTGGCTTCAGTTCGAGAAGGAGAGTCTTATCCTCCAGAGACTTCATGT
GCCAGAGTGGAGGATAGGTGGGGATATGTTCTACTCTCTCACAGGAGAGG
CTAGGAAGAATATTAGGAGGGACTGTGGGAAGAGCTATTGATTTGAGTAT
ATAAAAGGCAATGTCGGATTACATTGTGTGACATAGAGAGATATAGATAC
ACATATATATTTAGCCTCCCTTTTCGTTCTCTTTTTTACCTTTGTATTCT
GATCCTCCGTCTCTTTTTTTCCACCTTCTTTTTTTTCTTCTCCCATTTTT
TAATCTCTCCTCCTTTTCTTTCTCTCCCTCTTACCTCTTTCTTTTTTTTT
TTATCCTTCTTTTTTTTTCCTCCTTTATTTTTTTTTTTTCTTCCCCCCCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_b13.b1 MSMg01no405_b13.b1 CHROMAT_FILE:
MSMg01no405_b13.b1 PHD_FILE: MSMg01no405_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:59 2005
         (503 letters)



>mm_chr10_122832135_122833039
          Length = 905

 Score =  880 bits (455), Expect = 0.0
 Identities = 493/509 (96%), Gaps = 10/509 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccactctctacggaatagttgaaatcaccttttaagtatgataatgacatcctgcctt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atccactctctacgaaatagttgaaatcaccttttaagtatgataatgacatcctgcctt 260

                                                                       
Query: 61  tctccttttcaaatgctttccgtgtctcctcatgaagacccactcgccctgttcaggtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctccttttcaaatgctttccgtgtctcctcatgaagacccactcgccctgttcaggtcc 320

                                                                       
Query: 121 ttgaagcccttcactattcacatcagcctgtcctccctgagcctgtttcctgatctccct 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaagcccttcactattcacaccagcctgtcctccctgagcctgtttcctgatctccct 380

                                                                       
Query: 181 tctcc---ct--tctcttgccacctgctgaatttcttcctgtctaggacgcactccctct 235
           ||||    ||  |   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcatggctggt---ttgccacctgctgaatttcttcctgtctaggacgcactccctct 437

                                                                       
Query: 236 agtgcatgtttccttgcattccaattttagcctaaatgtcaccttcccggtgctgggtcc 295
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agtgcaggtttccttgcattccaattttagcctaaatgtcaccttcccggtgctgggtcc 497

                                                                       
Query: 296 cgctgcttcc-agtcacactgttactctcagtctgctgctgtttctcatcctccaagcgt 354
           |||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 498 cgctgcttccca-tcacactgttactctcagtctgctgctgtttctcatcttccaagcgt 556

                                                                       
Query: 355 caaacaggatgtctgcgcatcctcctcgtccgtttctatagcaatgttgaaatacggtta 414
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 557 caaacaggatgtctgcgcatcctcctcgtctgtttctatagcaatgttgaaatacggtta 616

                                                                       
Query: 415 acaaatgtttgtggaagggtttttcttggtgtgccatgttttatgaaaattcattttaaa 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 acaaatgtttgtggaagggtttttcttggtgtgccatgttttatgaaaattcattttaaa 676

                                        
Query: 475 atttagctcacaaagcaacgaatttcatt 503
           |||||||||||||||||||||||||||||
Sbjct: 677 atttagctcacaaagcaacgaatttcatt 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 905
Length adjustment: 10
Effective length of query: 493
Effective length of database: 895
Effective search space:   441235
Effective search space used:   441235
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)