BAC Information

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BAC

Clone NameMSMg01-405L09
Chromosome10 (Build37)
Map Location 104,739,657 - 104,740,254
singlet/doubletsinglet
Overlap geneTmtc2
Upstream geneLOC100042383
Downstream geneEG627573, BC067068, Ccdc59, EG667758, EG639162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405L09.T7 (MSMg01no405_l09.b1)MSMg01-405L09.TJ (MSMg01no405_l09.g1)
ACCAG504077AG504078
length745735
length of high quality
(start - end)
64 (189 - 252)599 (79 - 677)
definitionCHROMAT_FILE: MSMg01no405_l09.b1 PHD_FILE: MSMg01no405_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:46 2005CHROMAT_FILE: MSMg01no405_l09.g1 PHD_FILE: MSMg01no405_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTTTCTATATXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAT
CCGCGGAATTCTCAATTTTCGAATACTGAAGGCCTGAGAGAGTGCCGAAA
AAAAAATGTTCAACATCCTTAATCATCATGTAGATGCAAATCAAAGCGAT
CCTGAGATTCCGCCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGACAGAAGATGCTGGCGAGGATGTGGATAAAGAGGAACACTCCTCCAC
TGCTGGTGAGATTGATTGCAAGATTGTACAACCACTCTGGAAGGCAGTCT
GGAGGTTCCTTACAAAATTGGACTTTTTACTACTAGAAGATCCAGCAATA
CCTCTCCTGGGTATATACCCAGAAGGTGTTCCAACTGGTAATAAGAGCAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTCTAATAGCCACATGCTGGA
AAGAACCCAGATGTCCCTCAACAGAAGAATGGATACAGAAAATGTGGTAC
ATTTACACAATGGAGTACTACTCAGCTATTAGAAACAATGAATTCATGAT
GATTCTTGGACAAATGGATGTACCTGGAGGATATCTTCCTTACTGAGGTA
ACCCACTCCCATAAGAAGCTATTATATATGCACTCTCTGATAAGTGGATA
TTATTCCACAATCATATTACATCCCTTGATATTTTTTTGCTTTACTCTAG
ATAATCCTTGACTAGCGATTACCTTTGGTCGTTTATTTCTGTTCC
TTCTTGCATTAATGGGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTAATTAGAGGCGATCTTT
AAGAGACTTACAGACTGGCTTTATATATTAGGCAATTTCCACGCCTTAGA
GAAATTAAGTAAAAATAATTCTATTGAAAACTTGTGGTGGAAATGTTCTT
CAAAAGAATACAAACCTGGAAGGAGTTACCACAAGGTACAAAAAGAATAA
TGTGCAAAACATGGGATGGCTTCAATGTGAATCCGATAAACTGTGGTTAC
CAAACAAGATGAGTTCTAATGTTGGTAAGCATGAAGCAAGAATGAGTAAT
TTCAGGAAATAAAAAAGCAGAGGAAAATGTATTACCTGCAGCAGGGATAG
AGTTACTTCCAAAGCAAAGTCCTGTAAAGTGACATTTTGGATTGTATTGG
GAATTATATACATATTCATATAAGAAATGAAAGCCTTTAGTGGGCAGACA
CATTTCTGAGCATGCTCATTTTAAGGCCACTGCTCAAGAACAGAATATCA
GAGATAAATCTGGGGCCAGGCATCGCTTATGGAGCTCATGTTCAGTGGGT
TAGAATGTCAGGCAGAAGTTTAGGCATGTTCAACCTGCATCATAAAGATG
GTGCAAGAATAATAACTCTGAAGCTGGGCATAGTGGCACATACTTTTAAT
CCCAGGACATGATAGACAGGTTCAATCTATGTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_l09.g1 MSMg01no405_l09.g1 CHROMAT_FILE:
MSMg01no405_l09.g1 PHD_FILE: MSMg01no405_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:46 2005
         (599 letters)



>mm_chr10_104739457_104740454
          Length = 998

 Score = 1065 bits (551), Expect = 0.0
 Identities = 587/599 (97%), Gaps = 1/599 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctaattagaggcgatctttaagagacttacagactggctttatatattaggcaattt 60
           |||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 798 cttctaattagaggtgatctttaagagacttacagacgggctttatatattagacaattt 739

                                                                       
Query: 61  ccacgccttagagaaattaagtaaaaataattctattgaaaacttgtggtggaaatgttc 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ccacgccttatagaaattaagtaaaaataattctattgaaaacttgtggtggaaatgttc 679

                                                                       
Query: 121 ttcaaaagaatacaaacctggaaggagttaccacaaggtacaaaaagaataatgtgcaaa 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 678 ttcaaaagaatacaaacctggaaggagataccacaaggtacaaaaagaataatgt-caaa 620

                                                                       
Query: 181 acatgggatggcttcaatgtgaatccgataaactgtggttaccaaacaagatgagttcta 240
           |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 619 acatgggatgacttcaatgtgaatcagataaactttggttaccaaacaagatgagttcta 560

                                                                       
Query: 241 atgttggtaagcatgaagcaagaatgagtaatttcaggaaataaaaaagcagaggaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atgttggtaagcatgaagcaagaatgagtaatttcaggaaataaaaaagcagaggaaaat 500

                                                                       
Query: 301 gtattacctgcagcagggatagagttacttccaaagcaaagtcctgtaaagtgacatttt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 499 gtattacctgcagcagggatagagttacttccaaagcaaagtcctgtaaagtgataattt 440

                                                                       
Query: 361 ggattgtattgggaattatatacatattcatataagaaatgaaagcctttagtgggcaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggattgtattgggaattatatacatattcatataagaaatgaaagcctttagtgggcaga 380

                                                                       
Query: 421 cacatttctgagcatgctcattttaaggccactgctcaagaacagaatatcagagataaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cacatttctgagcatgctcattttaaggccactgctcaagaacagaatatcagagataaa 320

                                                                       
Query: 481 tctggggccaggcatcgcttatggagctcatgttcagtgggttagaatgtcaggcagaag 540
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tctggggccaggcatcacttatggagctcatgttcagtgggttagaatgtcaggcagaag 260

                                                                      
Query: 541 tttaggcatgttcaacctgcatcataaagatggtgcaagaataataactctgaagctgg 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tttaggcatgttcaacctgcatcataaagatggtgcaagaataataactctgaagctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 998
Length adjustment: 10
Effective length of query: 589
Effective length of database: 988
Effective search space:   581932
Effective search space used:   581932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)