BAC Information

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BAC

Clone NameMSMg01-408D07
Chromosome10 (Build37)
Map Location 18,850,717 - 18,851,133
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp, Tnfaip3, Tpi-rs5
Downstream geneEG637620, Olig3, Ifngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408D07.T7 (MSMg01no408_d07.b1)MSMg01-408D07.TJ (MSMg01no408_d07.g1)
ACCAG505978AG505979
length748758
length of high quality
(start - end)
322 (332 - 653)417 (74 - 490)
definitionCHROMAT_FILE: MSMg01no408_d07.b1 PHD_FILE: MSMg01no408_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:07 2005CHROMAT_FILE: MSMg01no408_d07.g1 PHD_FILE: MSMg01no408_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGG
AATTCCAAATAGATTGCACCAGAAAATAAATTCCTCCTATCACATAATAA
AAGACATCAAATGCACAAAACAAAGAAAGAATATTAAAAGCAGTAAGGAA
AAAATGTCAAGTAACATATGAAGGTAGACCTATCAGAATTACACCAGACT
TCTCACCAGAGACAATGAAAGGTAGAAGATGTCATAGAGACCCAAAGAGA
ACACAAATGCCAGCCCAGGCTACTATACCAAGCAAAACTCTCAATTACCA
TAGATGGAGAAACGAAGATATTCCTTGATTAAACCAAATTTACGCAATAT
CTTTCCACAAATCCAGCTGGCTTGCTCATCATGGCTTGCTCAACCTGCTT
TCTTATAGAACCCAGGACCACCAGCCCTGGGCGCCACTCACAGTGGTCTG
GGCCCTTCCCATCGATCAGTAATTTTAAAAAATGCCCTGCAGGGTTGCCT
ATAGCCCAACCTTATAAGGGCATATATGTTTTTAAAACTATTTTATTTAT
TTACATTCCAGATGTTGCCCCCTCCCAGTCCTGCCTCCCAGAGTTTTTCA
TTCCATTCCCTCTTCCCTTTGTAAACTCTGAGAGTGTGCCCCTCCTCTTT
GCCCCTCCAAAATCCTTCCTTCCCTGGGGCATCAAGTCTCTACAGGATTA
AGTGCAGCCTCTCCCACTGAGGCCGTACTATCAGCTTTCTGCTACAAA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTTTGTTTTTTTTTTTTAAGCTATAG
CATAGGGGAAACTAATACAATTCCTAATACTTTAAGCAGCAAACAACTAA
ATATGTCCTTTGGGTTTCAGAATGCTTTAAATACCTTCACATCATTTCTT
ATTTGAAGAATGCTAAGAATTTGACTTTGGTTGCTAATCTTCGTTTTTAT
TTTCTTAGATTCTTAGTAAAACATTTCCTTTGCCTTTTAGTAGTTGAGCC
ATCCCAAGTATACAAGATTCTTGGGTCAGAATATGAGATTGACCAGTTAT
CTTTGTTGACTTCTGCCATTTGGGTGCCTGGGTCAAGGTGATTCAGGCCT
GAGTCACTCTTTCTGGGATGAGGACCTTCTGATAATCCCTCTTGGTTTGT
CATGGGAATTTTCATTACCTTTTCTGTAGATTTTGGGATGTTTGTTTGNT
TGTTTTTTGTTTTGGGGNNGGNGNTTTTTTNTTTTTTTTTTTTTTTTTTT
TTTTTCTTTTTTTTTCCTCCTCTCCTCTTTTTTTCTCCTTTCTCTCTTTT
TCCTTTTCTCTCTTTTTCTTTCTTCCTTTTACCACCTCTTTTCCCCCCTT
TTCTCCCCTTTCCCCTTTTCCNNTTCCTTTTATTTTTCCCCTTTTTTTTC
CATTTTCCTTCTTTTTTTCTATTTTTTCCACCAATCTTCCTCCTATATCT
TCACCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_d07.g1 MSMg01no408_d07.g1 CHROMAT_FILE:
MSMg01no408_d07.g1 PHD_FILE: MSMg01no408_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:07 2005
         (417 letters)



>mm_chr10_18850517_18851333
          Length = 817

 Score =  791 bits (409), Expect = 0.0
 Identities = 415/417 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttgttttttttttttaagctatagcataggggaaactaatacaattcctaatacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tgtttgttttttttttttaagctatagcataggggaaactaatacaattcctattacttt 260

                                                                       
Query: 61  aagcagcaaacaactaaatatgtcctttgggtttcagaatgctttaaataccttcacatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcagcaaacaactaaatatgtcctttgggtttcagaatgctttaaataccttcacatc 320

                                                                       
Query: 121 atttcttatttgaagaatgctaagaatttgactttggttgctaatcttcgtttttatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttcttatttgaagaatgctaagaatttgactttggttgctaatcttcgtttttatttt 380

                                                                       
Query: 181 cttagattcttagtaaaacatttcctttgccttttagtagttgagccatcccaagtatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttagattcttagtaaaacatttcctttgccttttagtagttgagccatcccaagtatac 440

                                                                       
Query: 241 aagattcttgggtcagaatatgagattgaccagttatctttgttgacttctgccatttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagattcttgggtcagaatatgagattgaccagttatctttgttgacttctgccatttgg 500

                                                                       
Query: 301 gtgcctgggtcaaggtgattcaggcctgagtcactctttctgggatgaggaccttctgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgcctgggtcaaggtgattcaggcctgagtcactctttctgggatgaggaccttctgat 560

                                                                    
Query: 361 aatccctcttggtttgtcatgggaattttcattaccttttctgtagattttgggatg 417
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatccttcttggtttgtcatgggaattttcattaccttttctgtagattttgggatg 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)