BAC Information

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BAC

Clone NameMSMg01-408M14
Chromosome10 (Build37)
Map Location 46,204,168 - 46,204,563
singlet/doubletsinglet
Overlap genenone
Upstream geneDbil5-ps, LOC100042364, Hace1, LOC664781
Downstream geneLOC100041632, LOC668252, LOC100042387
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408M14.T7 (MSMg01no408_m14.b1)MSMg01-408M14.TJ (MSMg01no408_m14.g1)
ACCAG506424AG506425
length759763
length of high quality
(start - end)		275 (42 - 316)509 (70 - 578)
definitionCHROMAT_FILE: MSMg01no408_m14.b1 PHD_FILE: MSMg01no408_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:52 2005CHROMAT_FILE: MSMg01no408_m14.g1 PHD_FILE: MSMg01no408_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTATGTTTATATCTGTTATTATTTTTAATTGGGTTATTTGTTTTCTTGGT
ATCTAGTTTTTTGAGTTCTTTATATATTTTGGGTATTAGTCCTCTATCAG
ATACGTAGTTGGTAAAAATCTGCTCCTATTCTGCTGTCTGCCATTGTGTT
TAAAAGATGATGTCCTTTACTGTGCAGAAGCTTGTCAGTTTCATAATATT
CTATTTACTAATTGTCTTCTTCATGTCTGTGCTGGTAAGGCATCCCTAAA
TAGTAATAGTAGTAGTAATATTTATAAAATAATAATAATAAAACTGCTAG
AAATATCACACAATAGAGAAAAAAGAACTTACTAGCTGAAACATTTGATT
CAAGTATATCTACCGAAAAATATCTCCGTTTGCAATTCGACAATACGGAA
AGCATGTACTTGATAGGATGATGTGTCTCTGCAATCACGTGGAGGTCGAA
TTCTCTGCCTGGGTTATCTATTTTTAATTTGACACCATAGTTTGCTTACA
TAAAAGATTTGGTAAAACTGTAGCTTTGCAGCTATCCTTTTGGTGGGTAA
AATACTATTTCCTACTGAAATTGTATAGATTATTTCTATCACGGTAAAAT
AAAATGTTGGTTACTTTTTTGGACATATAAACACCCCTATTATTAGAATT
TTTCCCAAATATCTAAAAATTTTATAAGGGTTCCCCTGTTTGAAGGTAAT
TTTTTTGGG

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATTGATGAATTCTCATCACTGGAGTAGCCT
GTATCTACGGAATATTTTTCAATTGTTTATTAATAGAGGAGGACACAGCC
AATGTGGACATTACCATTCCTAAGAAGGAGGGCCTAGAGAATATGAAAAA
GGAAGGTGAACTCGAACATGGGAGGAAGCAAGTAAACAGCACACTTCTGT
AATTTCTGCTTAGAGATTCTGTTAAGTTCCTAACTTGGCTTCTCTCAGTG
ATGGGTGATAATTTGTAAGTTGCCATAAACCATTTACTCCCCAAGTTGCA
ACTGGTCATAGTGTTCACCACCACAACAGGAAGAAAACTAGAACATTTAT
AGACAAAGGATCTCAAGTAAAAGTTTAAAGGAGCCTGGGAAACTTCCCCA
TGTGTAAGGAGGGTCACCAGGCTTGGCCCACAACGATGACATTTTGGTGG
TCAGCATTCACATGAATACCTGTTGTAACACAGTGATAGGACTTAGTGGC
AAACAGCCACCCATTAATACCTTCTGTAAGATAGCCTCAGCACACAAAAA
GGTTTAACTTTGGGTCAGAAGGGCTCCTCCCAGACTCACTCTCAGGGCTA
TTGTCAATCCAGGGTGTCAGCATTGGGCATCTCTGCCAGCATTTATTAAA
CATTTTTGAACATTTTTTACACCCCTGTAATGGACTCCAAGTACTCCCCT
TTTGTTCTTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_m14.g1 MSMg01no408_m14.g1 CHROMAT_FILE:
MSMg01no408_m14.g1 PHD_FILE: MSMg01no408_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:53 2005
         (509 letters)



>mm_chr10_46203655_46204563
          Length = 909

 Score =  758 bits (392), Expect = 0.0
 Identities = 395/396 (99%)
 Strand = Plus / Minus

                                                                       
Query: 114 cctagagaatatgaaaaaggaaggtgaactcgaacatgggaggaagcaagtaaacagcac 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 cctagagaatatgaaaaaggaaggtgaactcgaacatgggaggaagcaagtaaacagcac 850

                                                                       
Query: 174 acttctgtaatttctgcttagagattctgttaagttcctaacttggcttctctcagtgat 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 acttctgtaatttctgcttagagattctgttaagttcctaacttggcttctctcagtgat 790

                                                                       
Query: 234 gggtgataatttgtaagttgccataaaccatttactccccaagttgcaactggtcatagt 293
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 789 gggtgataatttgtaagttgccataaaccctttactccccaagttgcaactggtcatagt 730

                                                                       
Query: 294 gttcaccaccacaacaggaagaaaactagaacatttatagacaaaggatctcaagtaaaa 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gttcaccaccacaacaggaagaaaactagaacatttatagacaaaggatctcaagtaaaa 670

                                                                       
Query: 354 gtttaaaggagcctgggaaacttccccatgtgtaaggagggtcaccaggcttggcccaca 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gtttaaaggagcctgggaaacttccccatgtgtaaggagggtcaccaggcttggcccaca 610

                                                                       
Query: 414 acgatgacattttggtggtcagcattcacatgaatacctgttgtaacacagtgataggac 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 acgatgacattttggtggtcagcattcacatgaatacctgttgtaacacagtgataggac 550

                                               
Query: 474 ttagtggcaaacagccacccattaataccttctgta 509
           ||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttagtggcaaacagccacccattaataccttctgta 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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