BAC Information

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BAC

Clone NameMSMg01-409D15
Chromosome10 (Build37)
Map Location 114,913,195 - 114,913,692
singlet/doubletsinglet
Overlap geneLgr5
Upstream geneTrhde, 4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131
Downstream geneA930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik, Ptprb, Kcnmb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409D15.T7 (MSMg01no409_d15.b1)MSMg01-409D15.TJ (MSMg01no409_d15.g1)
ACCAG506761AG506762
length797769
length of high quality
(start - end)
490 (48 - 537)498 (57 - 554)
definitionCHROMAT_FILE: MSMg01no409_d15.b1 PHD_FILE: MSMg01no409_d15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:30 2005CHROMAT_FILE: MSMg01no409_d15.g1 PHD_FILE: MSMg01no409_d15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGTCAAATGCCTTTTCTGCATCTGATAAGATGATCAAGTAGGG
TTTTTTTTTTCTTTTTCTTTCAGGTTGTTTATATGGTGGATTACATTGAT
GGATTTTTGTATGTTGAACCATCCCTTCATCTCTGGGATGAATCCTACTT
GATCGTGGTGGATGGTCTTTTTAATGTGTTTTTTGATTCAGTTTGCAAAT
ATATGAGATTTTCTACATCTATGTTTATAACGGAAATTGCACTTCAATTA
TCATTCTTTAGGGCCTTTAGGTGGTTTGTGTATGAGGGTAACTGTGCTTT
GATTGTTAGATTCCAAGGGGAATTTTTATTCTAATCCAGTCTATTTGGTG
TTCTGTGTGCTCCTTATGCCTTGATAGGCATCTCCTTCTTTAGGTTGGAT
AACTTTTCTTCTATGGCTTTGTTGAAAATATATTCTGTGCTTTTTGACCC
AGGTTTCTTTTCCTTCTTTTCTCCTTATTATTCTTAGATTTGATCTTTTG
CTACTGTCCTAAATATCCCAAATGGTTTGTGCCTGGGGCTCTTTACAGTT
AACATTTTCTGCGGACTGGAGAATCCATTTTCTTTTAATGTGTCCTGAAA
GCCTCGAAAATTCTCTTTTTGTCTGGGGTTGGTGAATCTTTTGCCCTTTA
GGTCCCTGTTCGTCCTCCCAAAATATTTTGTCTTCTGACTTCCTCCACAC
ATGGGGATTTTTTATATATTATTCGCGTCTTACCCATTCAAAAACAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAGAGTAGAAATGTGTTAATATCCCCTTAAATTTATTTATTTTTT
CCAGACTTAGATCTTTGTTTTAATAAATAAATAAATCAAAAATTTGTTTT
TGGTTTCAGGTGAGATCTATGTGACATTTATTCAAAGTCTTAAAAAAATT
TTTTTAAAGATTTATTTATTTTATGTATGTGAGCACACTGTTGCTGTTGC
TAGCTTCAGACACACCAGAAGAGGGCATAGAATTCAATCACAGATGGTTG
TGAGCCACCATGTGGTTGCTGGGATTTGAACTTAGGACCTTCAGAAGAGC
AGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCTATTCAAAGTCT
TTTACATGACAAGGATGAGAGCGGGGATGGAGAGAACCAAAAGATGGATG
GGTCCACACCCTCAAACGAGTATATGCTACGGAAGAAGAGATGGTTAACC
AACGTCAGCAACGCGGTGGACAGGGAGAGACCAAAAGAAGCATTTTTGCT
CCTCAGTAAGGTTTGCGTCATAAACAGCTGGGCCAGATCTGTAAACGGAG
GCTTAACACCCAGCCCCGCTGTGTGGGGTTTTAACAAAAAGTGTTAAGAT
CTTGTTAAAAGGCGGTTTCTATGGAGTAAAACTTGGCCCCTTGAACCTTT
CTCTTTTAAGAAATAAAAAGTTCCCCCCCCCTTCTCTACTTGTTTTCTTT
TCCTCATTGGTTTAGAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_d15.g1 MSMg01no409_d15.g1 CHROMAT_FILE:
MSMg01no409_d15.g1 PHD_FILE: MSMg01no409_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:30 2005
         (498 letters)



>mm_chr10_114912995_114913892
          Length = 898

 Score =  932 bits (482), Expect = 0.0
 Identities = 494/498 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagtagaaatgtgttaatatccccttaaatttatttattttttccagacttagatcttt 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 agagtagaaatgtgttaatatccccttaaatttatttatttttcccagacttagatcttt 260

                                                                       
Query: 61  gttttaataaataaataaatcaaaaatttgtttttggtttcaggtgagatctatgtgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 gttttaataaataaataaatcaaaaatttgtttttggtttcaggtgagacctatgtgaca 320

                                                                       
Query: 121 tttattcaaagtcttaaaaaaatttttttaaagatttatttattttatgtatgtgagcac 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttattcaaagtcttaaaaaattttttttaaagatttatttattttatgtatgtgagcac 380

                                                                       
Query: 181 actgttgctgttgctagcttcagacacaccagaagagggcatagaattcaatcacagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgttgctgttgctagcttcagacacaccagaagagggcatagaattcaatcacagatg 440

                                                                       
Query: 241 gttgtgagccaccatgtggttgctgggatttgaacttaggaccttcagaagagcagtcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttgtgagccaccatgtggttgctgggatttgaacttaggaccttcagaagagcagtcag 500

                                                                       
Query: 301 tgctcttaactgctgagccatctctccagccctattcaaagtcttttacatgacaaggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctcttaactgctgagccatctctccagccctattcaaagtcttttacatgacaaggat 560

                                                                       
Query: 361 gagagcggggatggagagaaccaaaagatggatgggtccacaccctcaaacgagtatatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagagcggggatggagagaaccaaaagatggatgggtccacaccctcaaacgagtatatg 620

                                                                       
Query: 421 ctacggaagaagagatggttaaccaacgtcagcaacgcggtggacagggagagaccaaaa 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 ctacggaagaagagatggttaaccaacgtcagcaacgcagtggacagggagagaccaaaa 680

                             
Query: 481 gaagcatttttgctcctc 498
           ||||||||||||||||||
Sbjct: 681 gaagcatttttgctcctc 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)