NNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTGGGTCAATAAAACTGATTTTATTTTGCTTGGAAAACTT
CAACTCCAAGAAAATAGTATTATTTTAATGGGCATTTATTGACAAGAGAG
ATAAATTAATCGGGGAAAAAAAGCAAATATTGCTTCTATAAAGACACTAT
TATAAGGCATGCACTGCCAATGATCTGTCAAGCGTGTTTACGAATGCCAT
CCTTCTTCAGAGGAGAAAAGAAAGCCCAGTGCTAGCTGAAAATGCTTTCA
GTATGAAATACTGATAACAAGCATCAGAGTAAGAGATTTATAACTGGCAT
TATTTTCTGGGTCTAAGGAAGACATTGCACATCTAAATATATGATAGACC
TTGAGGATAATATTCCACCACAAAAATATACTTCCCTCATTCTTTTTTTC
TAAGCATCACTAACCACTGACACAAGCAAATCTGTGCACATGAATGACAA
ACCAAGCCCTACTCAGATACATGTTGCATACTGCAGGCATCCGCATGTAA
AAAAACATTTCAAAACAAAACTTCTGTGAGTTTCGATCTTTCTTACGTGT
GTACTCTGATGATTAATTTACTGTCTCTTCTAAATTAATGCCTGTATTAC
AGAGATTGAGAATCCTAGATTATTATTAAAATGGTATTGTATGGAAATCC
CTGTTATGAAAGTAAATGCATTATTTCTTCCTAAAGAAGGTTCCCTCCCT
TACTTATTCTCACTTTGAAAATTGTTTGGA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXGCTTTGTCTAGGCTGGGCTATGGACTG
GCTTGATAGTTGAAAGCTGTACAGGTGACCACAGCTGCATTACTTTCTGA
GAGTAGCAACCATGTGCCTAAACTAGCATTACACAGCATCCTGCCTTCCC
CATTGTCTGCCCTTACATCCTTTCTGCCTCCTCCCCTTCAGTGATTCCCG
AGCTTTGCTACAGGTGGGTGGGTCCTGTTATTATAAATGTGTGTTTTGTT
TTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGNTTTGTTTTGTT
TTNNTTTNTTTTTTTTTNNTNTTNNTTTTNTTTNTNTTTTTTTTNTTTTN
TNTTTNTTTTTTTNTTTNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTNNN
TTTTTTTTTTTTTNNNNTTTNNTNTTTTTTNNNTTTTTTTNNNTTTTNNN
TTTNNTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTNNNTTTTNTTTTTTTTTTTTTTTTNTTTTTTTTNTTTTTTTTTTTATT
TTTNTTTTTTTTTNTNTNTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTNNNATTTTTTTTTTTTTTTTTTTTTNNTNTTNTTTT
ATTTTTTTTNNNTTNTTTTTTTTTTTTTTTTNNNATTTTTTTTNTTTTTA
TATTTAATAAATATATAATATAAA

Query= MSMg01no409_o19.b1 MSMg01no409_o19.b1 CHROMAT_FILE:
MSMg01no409_o19.b1 PHD_FILE: MSMg01no409_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:28 2005
         (541 letters)



>mm_chr10_100415403_100416342
          Length = 940

 Score = 1023 bits (529), Expect = 0.0
 Identities = 535/537 (99%), Gaps = 1/537 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgggtcaataaaactgattttattttgcttggaaaacttcaactccaagaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgggtcaataaaactgattttattttgcttggaaaacttcaactccaagaaa 264

                                                                       
Query: 65  atagtattattttaatgggcatttattgacaagagagataaattaatcggggaaaaaaag 124
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 265 atagtattattttaatgggcatttattgacaagagagataaatt-atcggggaaaaaaag 323

                                                                       
Query: 125 caaatattgcttctataaagacactattataaggcatgcactgccaatgatctgtcaagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caaatattgcttctataaagacactattataaggcatgcactgccaatgatctgtcaagc 383

                                                                       
Query: 185 gtgtttacgaatgccatccttcttcagaggagaaaagaaagcccagtgctagctgaaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgtttacgaatgccatccttcttcagaggagaaaagaaagcccagtgctagctgaaaat 443

                                                                       
Query: 245 gctttcagtatgaaatactgataacaagcatcagagtaagagatttataactggcattat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gctttcagtatgaaatactgataacaagcatcagagtaagagatttataactggcattat 503

                                                                       
Query: 305 tttctgggtctaaggaagacattgcacatctaaatatatgatagaccttgaggataatat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttctgggtctaaggaagacattgcacatctaaatatatgatagaccttgaggataatat 563

                                                                       
Query: 365 tccaccacaaaaatatacttccctcattctttttttctaagcatcactaaccactgacac 424
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 564 tccaccacaaaaatatacttccctcattctttctttctaagcatcactaaccactgacac 623

                                                                       
Query: 425 aagcaaatctgtgcacatgaatgacaaaccaagccctactcagatacatgttgcatactg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagcaaatctgtgcacatgaatgacaaaccaagccctactcagatacatgttgcatactg 683

                                                                    
Query: 485 caggcatccgcatgtaaaaaaacatttcaaaacaaaacttctgtgagtttcgatctt 541
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caggcatccgcatgtaaaaaaacatttcaaaacaaaacttctgtgagtttcgatctt 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 940
Length adjustment: 10
Effective length of query: 531
Effective length of database: 930
Effective search space:   493830
Effective search space used:   493830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)