BAC Information

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BAC

Clone NameMSMg01-410A10
Chromosome10 (Build37)
Map Location 80,327,019 - 80,327,261
singlet/doubletsinglet
Overlap gene3110056O03Rik
Upstream genePtbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7
Downstream geneTmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410A10.T7 (MSMg01no410_a10.b1)MSMg01-410A10.TJ (MSMg01no410_a10.g1)
ACCAG507372AG507373
length1,311766
length of high quality
(start - end)		---243 (81 - 323)
definitionCHROMAT_FILE: MSMg01no410_a10.b1 PHD_FILE: MSMg01no410_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:38 2005CHROMAT_FILE: MSMg01no410_a10.g1 PHD_FILE: MSMg01no410_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTACTCACAGACAGATACAGATAAACTAAACAAGCGGCGAGGGACGCCT
ACTACTCTACTAATATACGATGCGCATGGACGCAGTGAACAGAAACGAGG
CAGTCTCTACTACGCGCGATACCAGCTGCACTAGTATATATCTCCCTACC
GCGACGCTATACTGACCGCCATCCGCATCGAGCGGCGCGATNTCTCTAAT
CGNCTCAGTGATAGCGATAGCGATCTAGCGAGTACGNGTCGGACAGATCG
AAAACCGCAAGAGACAGACGGCTCCGTCGACACGCAGAGCACGCGATCGG
TAGATTGCCAATTATGCATCGTGTGTGTCATTACGNGCGGNTGATTGCGT
TAGACCGCGCCTATAGAGTCTAGCATAACACTCAGCTGCTGCGCTCCTTC
TTCGTCGTTCTCCTGCCTTCTGTCTGCTACACCGCATCACGCATGCTCAC
ACAGAATAATACCATGCGTGGTAGCGATGCTCGTTATCTACTCTACTCTA
TACCCTCTCAGCGACATTACGCTCCACATACACGCACCACGATCGCCACA
ACGCCGGAATCCATCAATCTCTTCAAACCTAAAACAAAGACTACAGGGCC
NAACAGATCTTATACCCGCTCGCGAGCGTGAGGCAACGCGCGCGTACGTA
TGATACGACGCGATACCTCCAATGATAATCGCTCAGAGCGCTCATTATTT
ACATCCGCGCGCTTACTCNTTTCCGCATCTATTTCCGCTAAGTATATTAA
TATAACCCTATACCCGCGACAACGATATCCCAAATCCCCAGCGTATACAT
AAATATAACCATAATATCCATCGCTATTCGCTCCGCTCGCTAATCCCATA
CCTTGCTCCGTGATCTCTTCTTATCATCATAGCATAATACGCGACAATAT
TACCTCAGCGTATTACTCACAGAATATGCATCTCTTCCAATCGCTCCACG
CTGTCTCCGTAAGCGCCTAACTCANCATTCTGTCCGTCCTACTACTCTAT
ATCTACTCTCATTCATCCGCACCGCCCATCCCTCTCATTGATATCGCATC
TCACTTATCGCCGACCGATCGCCACGTGAGAGATACATGTCAATATCTTA
ACACGGACGAATCTACAGATCGGTCGTAACAGTACTGTTCTATCTCGGCA
TCTCTGTACTGTACATCTTGGTATACGTCTGCGATACGCTCGTGTGTCGT
TACGCTCATTCTCTGCGCCGTGTNATCGCGGCATTGCCGCTACACAACAC
TCTTATCTACGCGCCGCATATATCCTCCGCGCTCATATATCCACTCAGCC
TCTCGTATTTN

NNNNNAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGCAGGAGAAAATGGAGC
TTCTATCGCCACGGGGTGGACGGCAAGTGGCACCTGGGCATCAGGTGCTG
CCTGAGCCCACGCCAAGATGTGAGTGACAAATAGTGGCTCTGGGCCAGCA
TGTCCCCTTGCCCTGCCCAGGAGCTAGTCGAAGGATGGACAGAACCCTTA
TCTAGATTCCTATCGGGGTGTGGGCTCTTGGCCAGGCCTAAATGAAACGG
GACACGGGCAGGCGGCAGCCGTGTTGTGTATCCCTAAAGATGGGAAGCCC
AAGGCCTCACTGGGCAGCGGGGGCACCCGAGGACAGCAGTGATAAGCCGA
CAGGGTGGATGTCATAATAGCCTGGGACAAAGCAACACTTACTGGTCCTC
ATTTCGTAAGATACCCCACACCTCTGAGACAGTGATTCATAATAGTGTCA
GCTGCAGCATGCGGCTCTGTGTTCGTTTGCGTAACACCCCCTGCTGTTGT
CGGTTACCCTTGTTCGTTATCCCCCGTCTTCGCTCCTTTTTTTTTCCCTC
CTTTCCTCCCCTTACCCTTCCCATTGCTTGTGCTTTTTTGCCCCCTGCCC
CCTCCCCCTTCTTTTCCCTTCCCTCACGTATCCCTCGCCTTATCCTTCCC
CTTGTTCCCTCCCTTTTTCCCTACCCTTTATCTCCTTCCCCTATCCTTTT
TTTTTCCCCTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_a10.g1 MSMg01no410_a10.g1 CHROMAT_FILE:
MSMg01no410_a10.g1 PHD_FILE: MSMg01no410_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:38 2005
         (243 letters)



>mm_chr10_80326819_80327461
          Length = 643

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgcaggagaaaatggagcttctatcgccacggggtggacggcaagtggcacctgggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agtgcaggagaaaatggagcttctatcgccacggggtggacggcaagtggcacctgggca 384

                                                                       
Query: 61  tcaggtgctgcctgagcccacgccaagatgtgagtgacaaatagtggctctgggccagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcaggtgctgcctgagcccacgccaagatgtgagtgacaaatagtggctctgggccagca 324

                                                                       
Query: 121 tgtccccttgccctgcccaggagctagtcgaaggatggacagaacccttatctagattcc 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 323 tgtccccttgccctgcccaggagctaggcgaaggatggacagaacccttatctagattcc 264

                                                                       
Query: 181 tatcggggtgtgggctcttggccaggcctaaatgaaacgggacacgggcaggcggcagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tatcggggtgtgggctcttggccaggcctaaatgaaacgggacacgggcaggcggcagcc 204

              
Query: 241 gtg 243
           |||
Sbjct: 203 gtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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