BAC Information

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BAC

Clone NameMSMg01-412A14
Chromosome10 (Build37)
Map Location 58,086,803 - 58,087,155
singlet/doubletsinglet
Overlap geneEdar
Upstream geneLOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981
Downstream geneLOC624335, LOC100039099, Sh3md4, Sept10, Ankrd57, LOC664892, P4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412A14.T7 (MSMg01no412_a14.b1)MSMg01-412A14.TJ (MSMg01no412_a14.g1)
ACCAG508905AG508906
length737759
length of high quality
(start - end)
586 (76 - 661)353 (79 - 431)
definitionCHROMAT_FILE: MSMg01no412_a14.b1 PHD_FILE: MSMg01no412_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:17 2005CHROMAT_FILE: MSMg01no412_a14.g1 PHD_FILE: MSMg01no412_a14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAAC
CAGTAGCCAGCATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTA
AAATCAGGGACTAGACAAGGCTGTCCACTCTCTCCCTACCTATTCAACAT
TGTACTTGAAGTCCTAGCCATAGCAATTAGACAACAAAAGGAGATCAAGG
GGATACAAATTGGAAAGGAAGAAGTCAAATTATCGCTTTTTGCAGATGAT
ATGATAGTACATATACGTGACCCTTTTTATTCCACCAGAGAACTCCTAAG
CCTGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAACA
AGTCAATGGCCTTTCTCTACACAAAGGACAAACAGGCTGAGAAAGAAATT
AGGGAAACAACACCCTTCTCAATAGCCACAAATAATATAAAATACCTAGG
CGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGACAAGAACTTCATGT
CTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATATCCCA
TGCTCATGGATCGGCAGGATCAATATAGTANAAATGGCTATCTTGCCAAA
AGCAATCTACAGATTCGATGCAATTCCCATCAAAATTCCAACTCAATTTT
TTCACGAATTAGATAGGGCGATCGGCAGATTCATCTG
TTCTCGATGAAATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATCTTCATGCTGTACAGCAG
GCACTGGCTGAGCCATCTCTCCAGCCCAGAGAACATTTTAAACATTTTCT
TTCAGCACTAACCTAAACGAACAAAAGTTTGGCCTTTAGAGTTCTGTCCA
CAGCTAGAGGAGAGTGGAGAGCACTGGCCTATCTTCGGCTCTCCCAGAGC
TCCTCCAGTCTGAAGTGTTCATTGAACACCTGTGGCCCAGCAAGGGTCAA
GGCCATTTATCTTCCTGTAAATATGTGATCCCTTACTCGTTCATTCTTAA
TTTGATTTCCTCTACAGATGCTCCTGGCCTTAACCGTGAGGTTGCATTCT
GATAAGATTGTAAGCTAAAGAAATTGTTAAAGAGAAAATGCGTTCAGTGC
ACCCAGCTCTCTACTTAGCTGGTGGAGCATGCTCAGAACACGCATCTTTG
CCTACAGTCAGGTTGCATCTGCTAACATAATAACCTACTTCCGAATAAAG
CTTGTCTCATGTAAGTTCCGCTTTGTATTTTGAAAGGATTATTGGCTGCC
CGGGTAATACTCCCCACCATCTTTGCCTTTATCCCCTTCTTGATTGAACA
TTCTTCCTTTCTGCACATCCGTATACAATATATTTGTTCTTGCGCTTGCT
CTTTTTCTATTCTGATTTTATTTCCTAGTTTTCTTTATTTTTTTTATCAC
CCATTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_a14.g1 MSMg01no412_a14.g1 CHROMAT_FILE:
MSMg01no412_a14.g1 PHD_FILE: MSMg01no412_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:17 2005
         (353 letters)



>mm_chr10_58086603_58087355
          Length = 753

 Score =  659 bits (341), Expect = 0.0
 Identities = 350/353 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatcttcatgctgtacagcaggcactggctgagccatctctccagcccagagaacattt 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 agatcttcatgctgtacagcaggcactggatgagccatctctccagcccagagaacattt 260

                                                                       
Query: 61  taaacattttctttcagcactaacctaaacgaacaaaagtttggcctttagagttctgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 taaacattttctttcagcactaacctaaacgaacaaaagtttggcatttagagttctgtc 320

                                                                       
Query: 121 cacagctagaggagagtggagagcactggcctatcttcggctctcccagagctcctccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacagctagaggagagtggagagcactggcctatcttcggctctcccagagctcctccag 380

                                                                       
Query: 181 tctgaagtgttcattgaacacctgtggcccagcaagggtcaaggccatttatcttcctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgaagtgttcattgaacacctgtggcccagcaagggtcaaggccatttatcttcctgt 440

                                                                       
Query: 241 aaatatgtgatcccttactcgttcattcttaatttgatttcctctacagatgctcctggc 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacatgtgatcccttactcgttcattcttaatttgatttcctctacagatgctcctggc 500

                                                                
Query: 301 cttaaccgtgaggttgcattctgataagattgtaagctaaagaaattgttaaa 353
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttaaccgtgaggttgcattctgataagattgtaagctaaagaaattgttaaa 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)