BAC Information

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BAC

Clone NameMSMg01-414O20
Chromosome10 (Build37)
Map Location 48,562,737 - 48,710,490
singlet/doubletdoublet
Overlap geneLOC100041689
Upstream geneLOC100042398, LOC546562
Downstream geneGrik2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414O20.T7 (MSMg01no414_o20.b1)MSMg01-414O20.TJ (MSMg01no414_o20.g1)
ACCAG511106AG511107
length782782
length of high quality
(start - end)		464 (49 - 512)437 (80 - 516)
definitionCHROMAT_FILE: MSMg01no414_o20.b1 PHD_FILE: MSMg01no414_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:08 2005CHROMAT_FILE: MSMg01no414_o20.g1 PHD_FILE: MSMg01no414_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,562,737 - 48,563,196)(48,710,183 - 48,710,490)
sequence
NNNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTACAATGTACCTGCAGTAAGATTTAGCCAAATGGATGCAA
ATTTTGAATAAGGTGAAATGCTCATCACAATTTATTATAGTTTAGTTAAA
TTGCCACATAATTTTAGACATAGATTTATCTTTCTGGCATATGTTAACAT
TTTGTGGTTTGTAGCTGAATAATAACTTACATGGGCATGGCACATTTGAG
TTATCCAGTCATTTGTTGCCACGCACTCTGGTCGAGTCAGCTTGACAGGC
CGAGAGGCTTGGAAGCTACTCACGAGGCAAAGAGTTTCACAGAAACTCAC
CTCCTGGAGTCTGTCGTCCTCTCTAACCCATACATTAACATTCCATTCCC
GCATTAGTCTGGTGTATGGATCCATGTGCTCTCTTTTAGTATTATCCTAT
TATAAGTGACTTTTAAGGTCGAATTCTGACATAGCCAAGCCTTCACCAAT
GTTCCAATGTCCTAGAAAGTCCTTGAGCTGACAATGGGCTTGGAATTCAA
GATGAATGTTGCCTATTCAGTGACATTCAGAATTGCCTCTGGGATTACAC
TATCACTTTTGAAAAAAGCTAAGGCCCTGCCCCTACCCGGAAATTTCCCT
CCTCTAGGAAAGAAGGAATTTCTTACCTATGCGGAACCCCAAAACAAACC
TATTACCATAAAAAGTGGAGTTTACCCCCAACCCCCCTATTTTATATGGG
CCAAGGGTAAGGGGGGCTATACAAAATAAAAG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAGAATTTTTTTTTTCTTA
GGAGGGAAGAGATGATAGGTTTAAGTCTAGTGAGGCTCTTGAGAGAGTAT
GGGTACTGAGCATTGGTGATGTATTGGATAAGGTTTTATAATTGGATGAC
AACAGGGGAATGGTGTTTAGTAATATAGGGGTTCTACGTGTTTCAGACTT
GGGGGTTCACCTGAGAGGCTGGCAAAGGAAATGTCACATTAGAGCTAGTA
GGTTGCAGAGTTAGAAGGAAGAGGAGAGTGTTTTGTTAGCAATCTTGAGT
TCAGGCAAATGGTGGGAGCCAAAGAAATAGAGGCTCCTATTTTCGCTAGA
GTATCCATTCCCAGTAAGGAATGGGATACATTGGCTCTACCAGAAAAGAA
GGTGTGAGAGGAACACCCCTAAAACCAGAACTGAGTGGTGGTGTCTAGTT
AGGTTTGAAGGGCTGTTCTCCTACCCTAACAATAGGGAAACTAGGATAGA
TGGATCCCCAAAACTCCGGCAGGACCGAGTATGTGCTCCCTATGCCCCCA
TAAGAAGTGAATGGGTCCTCCCTGATACCCCTTCGACTATTCCTTGGTCC
CCGGCCATTAATGGAATTGGGCTCTTTTTCTTCAGCTTCCATCTCCTTCG
CGCCCCCTGCCTCTATTCCACACTCCCCCTGGCGCTCTTTAACTCGGCCA
TCTTCCTCCGGGTCACCCTTACTCCCCCGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_o20.b1 MSMg01no414_o20.b1 CHROMAT_FILE:
MSMg01no414_o20.b1 PHD_FILE: MSMg01no414_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:08 2005
         (464 letters)



>mm_chr10_48562533_48563396
          Length = 864

 Score =  835 bits (432), Expect = 0.0
 Identities = 453/460 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactacaatgtacctgcagtaagatttagccaaatggatgcaaattttgaataag 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactacaatgtatctgcagtaagatttagccaaatggatgcaaattttgaataag 264

                                                                       
Query: 65  gtgaaatgctcatcacaatttattatagtttagttaaattgccacataattttagacata 124
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 265 gtgaaatgctcatcacaatttattatagtttagttaaattgctacataattttagatata 324

                                                                       
Query: 125 gatttatctttctggcatatgttaacattttgtggtttgtagctgaataataacttacat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatttatctttctggcatatgttaacattttgtggtttgtagctgaataataacttacat 384

                                                                       
Query: 185 gggcatggcacatttgagttatccagtcatttgttgccacgcactctggtcgagtcagct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggcatggcacatttgagttatccagtcatttgttgccacgcactctggtcgagtcagct 444

                                                                       
Query: 245 tgacaggccgagaggcttggaagctactcacgaggcaaagagtttcacagaaactcacct 304
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgacaggctgagaggcttggaagctactcacgaggcaaagagtttcacagaaactcacct 504

                                                                       
Query: 305 cctggagtctgtcgtcctctctaacccatacattaacattccattcccgcattagtctgg 364
           |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 505 cctggagtctgtcgtcctctctaacccataaattaactttccattcccgcattagtctgg 564

                                                                       
Query: 365 tgtatggatccatgtgctctcttttagtattatcctattataagtgacttttaaggtcga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 565 tgtatggatccatgtgctctcttttagtattatcctattataagtgacttttaagatcga 624

                                                   
Query: 425 attctgacatagccaagccttcaccaatgttccaatgtcc 464
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attctgacatagccaagccttcaccaatgttccaatgtcc 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no414_o20.g1 MSMg01no414_o20.g1 CHROMAT_FILE:
MSMg01no414_o20.g1 PHD_FILE: MSMg01no414_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:08 2005
         (437 letters)



>mm_chr10_48710183_48711019
          Length = 837

 Score =  534 bits (276), Expect = e-156
 Identities = 300/308 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaagaattttttttttcttaggagggaagagatgataggtttaagtctagtgaggctct 60
           |||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 308 ctaagaattttttttcccttaggagggaagagatgataggtttaagtccagtgaggctct 249

                                                                       
Query: 61  tgagagagtatgggtactgagcattggtgatgtattggataaggttttataattggatga 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 248 tgagagagtatgggtactgagcattggtgatgtattggataaggttttttaattgaatga 189

                                                                       
Query: 121 caacaggggaatggtgtttagtaatataggggttctacgtgtttcagacttgggggttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 caacaggggaatggtgtttagtaatataggggttctacgtgtttcagacttgggggttca 129

                                                                       
Query: 181 cctgagaggctggcaaaggaaatgtcacattagagctagtaggttgcagagttagaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 cctgagaggctggcaaaggaaatgtcacattagagctagtaggttgcagagttagaagga 69

                                                                       
Query: 241 agaggagagtgttttgttagcaatcttgagttcaggcaaatggtgggagccaaagaaata 300
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  agaggagagtgggctgttagcaatcttgagttcaggcaaatggtgggagccaaagaaata 9

                   
Query: 301 gaggctcc 308
           ||||||||
Sbjct: 8   gaggctcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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