BAC Information

Click to search

BAC

Clone NameMSMg01-415G10
Chromosome10 (Build37)
Map Location 76,132,756 - 76,132,964
singlet/doubletsinglet
Overlap genenone
Upstream geneCabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2
Downstream geneCol6a1, Pcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415G10.T7 (MSMg01no415_g10.b1)MSMg01-415G10.TJ (MSMg01no415_g10.g1)
ACCAG511469AG511470
length751777
length of high quality
(start - end)
241 (65 - 305)230 (65 - 294)
definitionCHROMAT_FILE: MSMg01no415_g10.b1 PHD_FILE: MSMg01no415_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:46 2005CHROMAT_FILE: MSMg01no415_g10.g1 PHD_FILE: MSMg01no415_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCCGGAAAAAGACTCCAATACAATAGCAGGTCCGNGGAATTCAA
TTTACCAAAAACTCTCTCTCCAGTCTGGGATTTTTGGGGTTTCTGATCAT
TGAGACTGGAAGGTGTCTTTAGCCTAGAAAGGCAAGAAAGATGAGGCGGG
TCTGGAGCCAACTCATTTGAACTATAGTCTTAGACAAGGTGTTTCTCGGC
AATAAGCGTGGTCCACTCAGAGATAAGTAGAGACTGACTCTTGGGACTAA
CAACATGAAGACAGGTTACCAGCGTTCCCACTTGTTCCAACCACCTGGAC
AGGATTCCTGCTTTCCTGCCCACTCTAGCCATTCATCAGACATCTGTAGC
CAAGTAAAGAGCCAAGGTTGGCCCGAATAAGTGTCCCTGAACAGTCACCC
AGGTAACTGTTCTCATATACAACATTCAATACGTTAACAGCAGTCAGGCC
AATGGGGAGAGTTAATGATGAATGCTTCCGCCTGTGACCTCCTGGTTAGT
GTCCATCCATTCCGAGTTAGTGTACCTGATTATTTCATTTACCCCTTTTC
TTATCCCCCCCTCTTTTATTTGTCCCCGCGCCCTTCCAACCTTCCTAATT
AAAGTATTTCTTCCCCCACTTTCCTCCCCTAATCTCCTTTCTTTCTTTTT
CCCCATTTCTTTTCCCCGTTCATTCACCATTTTACATTTTTTCCCCACCC
TTTTTTTTCTTCCTTTATTATCCCTTCTGCACCCTATACCTTTCCTTCAG
C
GTGGTAGCCTGGCGGCGCCTTTCCAAACACATTAGGNGACCTATAGATGA
CACAAGGAATTCTCCCTGAGGAAACCGAATGGCAGAGAACACCTGAAAAA
TGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAG
ATTCCACCTCACACCAGTCAGAACGGCTAAGATCAAAATTCAGGTGACAG
CAGATGCTGGCGAGGATGTGGAGAAAGAGTATTATTCCTCTATTGTTGGT
AGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCATTTCTTA
TATAATTGGACATAGCACTACCGGAGGATCCCACAATAACTCTCCTGGCC
ATATATCCAGAATATGTTCCACCTGTTAATAACGATACCTGCCTCTCCAT
GTTCATATTTGCTTTACTTATTCTATCCACAAGCTGCATTGATCTTCCTA
TTTTCCTCTCTCCATTCAACTGCTTACTTTTACCTGTGTCACTCCTTCCC
CTATGCTTTCATTCCTCCTTCCATTATTTTCTAATTCCTCCTTTCACCCC
CCTTTCTTTGCTTCTTTCGCTTTCTTGCACTTCTCTCTTTCCCTGTTTGC
ATTCTATATCTCTATCTCCTCTTTCCTTTCCTTACCGTCCTTTCTCCTTT
TTTCTTCTTTTTCCTTTCGCCCTTTCCTTTTCCCCCCGCCTTTTTTCTCC
TCTTCTCTATTCCCTTATCCATCTATTCTTTTTTCCCTCTCTGTTTTCTA
TCTCCGTACCCTTATTCGTTCTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_g10.b1 MSMg01no415_g10.b1 CHROMAT_FILE:
MSMg01no415_g10.b1 PHD_FILE: MSMg01no415_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:46 2005
         (241 letters)



>mm_chr10_76132556_76133196
          Length = 641

 Score =  381 bits (197), Expect = e-110
 Identities = 206/209 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctccagtctgggatttttggggtttctgatcattgagactggaaggtgtctttagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctccagtctgggatttttggggtttctgatcattgagactggaaggtgtctttagcc 260

                                                                       
Query: 61  tagaaaggcaagaaagatgaggcgggtctggagccaactcatttgaactatagtcttaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaaaggcaagaaagatgaggcgggtctggagccaactcatttgaactatagtcttaga 320

                                                                       
Query: 121 caaggtgtttctcggcaataagcgtggtccactcagagataagtagagactgactcttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 321 caaggtgtttctcggcaataagcgtggtccactcagagataagtagagactgactcaagg 380

                                        
Query: 181 gactaacaacatgaagacaggttaccagc 209
           ||||||||||||||||| |||||||||||
Sbjct: 381 gactaacaacatgaagaaaggttaccagc 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)