Query= MSMg01no415_g18.b1 MSMg01no415_g18.b1 CHROMAT_FILE:
MSMg01no415_g18.b1 PHD_FILE: MSMg01no415_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:48 2005
(498 letters)
>mm_chrX_108658339_108659236
Length = 898
Score = 934 bits (483), Expect = 0.0
Identities = 492/495 (99%)
Strand = Plus / Plus
Query: 4 ggaattctacgcattactcatcatacctgctggataagatgatttgaaacattactccaa 63
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctacgcatgagtcatcatacctgctggataagatgatttgaaacattactccaa 263
Query: 64 gcactaacacattactcatagaggctatttataattttacaaataactacttagtgatat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcactaacacattactcatagaggctatttataattttacaaataactacttagtgatat 323
Query: 124 aacacattgaactttatgggaccacacaaagcatttaccaatattaattcaaatgaatta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacacattgaactttatgggaccacacaaagcatttaccaatattaattcaaatgaatta 383
Query: 184 tggcaaaattgagaagatttaagacttgttttatcatcccttttctaaaacttaaagata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggcaaaattgagaagatttaagacttgttttatcatcccttttctaaaacttaaagata 443
Query: 244 attttctcttcttccatccagaacctaatgtcttttagacttccatggctaaacctttag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attttctcttcttccatccagaacctaatgtcttttagacttccatggctaaacctttag 503
Query: 304 gattactcttagtcaacgatgataatcactgaccagttaattagacagaagtgatttgct 363
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gattgctcttagtcaacgatgataatcactgaccagttaattagacagaagtgatttgct 563
Query: 364 gacctaggattcactatgtaggccggttttaaaactcacagagatctgcctctctctgcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gacctaggattcactatgtaggccggttttaaaactcacagagatctgcctctctctgcc 623
Query: 424 tcttctcaaattctgaagacaaagatgagagccatcatggccagcttaactcagaattct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcttctcaaattctgaagacaaagatgagagccatcatggccagcttaactcagaattct 683
Query: 484 taatatgtcactaag 498
|||||||||||||||
Sbjct: 684 taatatgtcactaag 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no415_g18.g1 MSMg01no415_g18.g1 CHROMAT_FILE:
MSMg01no415_g18.g1 PHD_FILE: MSMg01no415_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:48 2005
(496 letters)
>mm_chr10_57767637_57768535
Length = 899
Score = 536 bits (277), Expect = e-156
Identities = 402/445 (90%), Gaps = 9/445 (2%)
Strand = Plus / Minus
Query: 54 gtgcatttaatagaaatatcagtcattacagttctttattgttggtcacaaaaaacgtat 113
|||||||||||||||||||||||||||||||||| |||||| |||||||||||| | |||
Sbjct: 695 gtgcatttaatagaaatatcagtcattacagttccttattgctggtcacaaaaagcatat 636
Query: 114 atgtc--ttgtaattaaagtaa-ttttgtcatgcaaaaggtatttttttactatattcat 170
||||| ||||||| ||||||| |||| |||||||||||||| |||||| |||||||||
Sbjct: 635 atgtcttttgtaatcaaagtaatttttatcatgcaaaaggta--tttttattatattcat 578
Query: 171 atgaacagaccagatttgaaaacaagtttattcagacttcaaaaggcatgttaggccc-a 229
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 577 atgaacagattagatttgaaaacaagtttatacagacttcaaaaggcatgttaggcccaa 518
Query: 230 aagaaacatgtagtttattttaatactactaaaatgacacagataccactgggcatactc 289
|||||||||| ||||||||| |||||||||||||||||| ||| || ||||||||||||
Sbjct: 517 aagaaacatggagtttatttaaatactactaaaatgacatggatgccgctgggcatactc 458
Query: 290 acattcacagttcaggaagatagaaaacctcaccttctagagtcagctctgagagagatg 349
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 457 acattcacagtttaggaagatcgacaacctcaccttctagagtcagctctgagagagatg 398
Query: 350 cattttca-ctagcatactcactcgctaggtctgtctaacacaggcggagtg-actgaga 407
| |||||| | |||| |||||||||||||||||||||||||||||||||| | || ||||
Sbjct: 397 cgttttcatc-agcacactcactcgctaggtctgtctaacacaggcggagcgaacagaga 339
Query: 408 gatggacagctttaagaaaacaaactcgttatgttagcagcaaatatcagcgaaaccaga 467
| ||||||||||||| ||||||||| |||| |||||||||| ||||| |||||| |
Sbjct: 338 caaagacagctttaagaggacaaactcgacatgtcagcagcaaatttcagccaaaccaaa 279
Query: 468 ttggaaaccaatattcatagtgact 492
|||||||||||||||||||||||||
Sbjct: 278 ttggaaaccaatattcatagtgact 254
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 899
Length adjustment: 10
Effective length of query: 486
Effective length of database: 889
Effective search space: 432054
Effective search space used: 432054
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
