BAC Information

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BAC

Clone NameMSMg01-415G21
Chromosome10 (Build37)
Map Location 103,543,242 - 103,543,739
singlet/doubletsinglet
Overlap genenone
Upstream geneLrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292, LOC100042383
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415G21.T7 (MSMg01no415_g21.b1)MSMg01-415G21.TJ (MSMg01no415_g21.g1)
ACCAG511491AG511492
length720719
length of high quality
(start - end)		501 (45 - 545)482 (76 - 557)
definitionCHROMAT_FILE: MSMg01no415_g21.b1 PHD_FILE: MSMg01no415_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:49 2005CHROMAT_FILE: MSMg01no415_g21.g1 PHD_FILE: MSMg01no415_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGTATTCCTTATAACAAGGTTCCCATAATACTGGAAGCACAGAA
GCCAGAAAACTAATAAGAAAGTGTAGTTTTTAATGTTATTTCAAAAATGG
ATGCTTAGGTTTGATTACTCTAAGTAAAACTTTCTGGAAGCAATTAGTCT
ACAGAAATCTATTATATAATTTCATCCCTGGAAAATAAGCTTGAATTATA
AAAATACCTGAGAAAGTTTTATTTTCACATCCCAGACTCCTCAGGGAACT
ATAGCTGAAAGCAAATTTCAAATGCTCTTCATACTCAGGAGAAGACACAC
CTTTCAACACTCATTTAAATGCAGTTGTGCGTAAAGTATTGCCTAGGTCA
GGCTACAGACTCTTGTTTTGTTTCATGATTAAAGTTTCTATAACATAGAG
AAATCAGATTTGGTTACTAGGGGTATATGTCCATTATGAATTCAGGCATA
TCTCTAGGGCTGCTGCATACTACCGTTTTATTTTGTCTTTAGACTTCACA
TATCATCAAAGCAGGAAGCTATGATAACAATAGTGGTTTGGTGTTTGAAA
GATCAGACTATAAGTTGGGCAATGCTCATTTATGCCCCCGAAAGGATACT
AAAAAAAACTTATGGAAATAATAGGGGAAAGAAATTCGGCCTTCCCTCAT
TAACAAAGGGTAAAGAACAT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCCAATGGCTG
AGAAGCACCTGAAAAAATGCTCAGCATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCATCTCACTCCAGTCAGAATGTCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGTATTGCAAGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCATAAAATTGGACATAGTACTACCGGAGGATCC
CACAACACCTCTCCTGGACACATATCCAGAAGATGTCCCAACCGGTAAGA
AGGACACATGCTCCACTAGGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAAT
GTGGTACATTTACACAATGGAGTACTACTAAGCTATTAAAAAGAATGAAT
TTATGAAAATCCTANGCAAATGGATGGGACCTGGAGGCATCATCCTGAGT
GAGGGAACACAATCCCAAAAAAACTCAATGATATGTACTCACTGATAAGT
GGATATTAACCCACAAACTTATTGAACCCGAAATTATAAAAACATTTGGA
AAACCCCTGGAACGGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_g21.b1 MSMg01no415_g21.b1 CHROMAT_FILE:
MSMg01no415_g21.b1 PHD_FILE: MSMg01no415_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:49 2005
         (501 letters)



>mm_chr10_103543038_103543939
          Length = 902

 Score =  924 bits (478), Expect = 0.0
 Identities = 493/498 (98%), Gaps = 1/498 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattc-catgtattccttataacaaggttcccataatactggaagcacagaagccagaa 63
           |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatggattccttataacaaggttcccataatactggaagcacagaagccagaa 264

                                                                       
Query: 64  aactaataagaaagtgtagtttttaatgttatttcaaaaatggatgcttaggtttgatta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aactaataagaaagtgtagtttttaatgttatttcaaaaatggatgcttaggtttgatta 324

                                                                       
Query: 124 ctctaagtaaaactttctggaagcaattagtctacagaaatctattatataatttcatcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctaagtaaaactttctggaagcaattagtctacagaaatctattatataatttcatcc 384

                                                                       
Query: 184 ctggaaaataagcttgaattataaaaatacctgagaaagttttattttcacatcccagac 243
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 ctggaaaataagcttgaattataaaaatacctgagaaagttttatttccacatcccagac 444

                                                                       
Query: 244 tcctcagggaactatagctgaaagcaaatttcaaatgctcttcatactcaggagaagaca 303
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 tcctcagggaactatagctgaaagcaaatttcaaatgatcttcatactcaggagaagaca 504

                                                                       
Query: 304 cacctttcaacactcatttaaatgcagttgtgcgtaaagtattgcctaggtcaggctaca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cacctttcaacactcatttaaatgcagttgtgcgtaaagtattgcctaggtcaggctaca 564

                                                                       
Query: 364 gactcttgttttgtttcatgattaaagtttctataacatagagaaatcagatttggttac 423
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gactcttgttttgtttcataattaaagtttctataacatagagaaatcagatttggttac 624

                                                                       
Query: 424 taggggtatatgtccattatgaattcaggcatatctctagggctgctgcatactaccgtt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taggggtatatgtccattatgaattcaggcatatctctagggctgctgcatactaccgtt 684

                             
Query: 484 ttattttgtctttagact 501
           ||||||||||||||||||
Sbjct: 685 ttattttgtctttagact 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 902
Length adjustment: 10
Effective length of query: 491
Effective length of database: 892
Effective search space:   437972
Effective search space used:   437972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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