BAC Information

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BAC

Clone NameMSMg01-415N17
Chromosome10 (Build37)
Map Location 56,784,920 - 56,785,230
singlet/doubletsinglet
Overlap genenone
Upstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355, LOC100042628, EG629739
Downstream geneLOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415N17.T7 (MSMg01no415_n17.b1)MSMg01-415N17.TJ (MSMg01no415_n17.g1)
ACCAG511815AG511816
length733741
length of high quality
(start - end)		505 (64 - 568)478 (66 - 543)
definitionCHROMAT_FILE: MSMg01no415_n17.b1 PHD_FILE: MSMg01no415_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:21 2005CHROMAT_FILE: MSMg01no415_n17.g1 PHD_FILE: MSMg01no415_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
CACATTCATTTTCATAATGGCTAGTCAAGATTGCAATCGTACCAACAGTG
AATGATCCTTTAATACTGGGGTAGATCTGCTTTGATAGAGAGGTTGGATG
TGGAGTAGGAGGGACCTGTCAGGGACAGACTATTGCCATTGCTCTTGGTT
GCCCTCAGAGAGAGAAGGTAAATCTCTATTACTGAAGATATTATGCACTT
CAGACACAAAGTCTAGAGGCTAAAGTCTAAAGTCTAATCTGAAACTGGCC
TCATAGCCTCCTTCCTTAGAGAAAGCTTTCATGGTGCTGAAAGGTACCTG
CCAATCTACCAAAGGAGGAAAGCAACCAAAAGTCATACTTAGATATGATG
TTTATGAACCACAAGGAGGAGCATGGCATAATAACCACAAGGTTTCAGTG
TTGGCATGCATACATTGATAGTAACCATCAGCTCTCANATTGGGCTTAAA
ACCTACTCAAAAACAGATGAATTATACCTGGTACTAGAAACCTAGTCAAC
TAACCAGGGCTAGTAAAGTCATGGGTCTTGAAGAATACCCTACGCGGTCA
CTTTATTGACTCAGCCTAATCATTACCTACTTTGCGATATTTGTCCTTAA
CCCAGAGATAAAATAGCCTTCCCCTGGACCAAGGGAAAATCTCTTTTGTA
AGAGGGGGGGTTAACCAACAACCCCCCTTCGTC

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAGATATG
CTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTG
GGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCT
GTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGT
TAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTGT
TACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAG
TGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGTA
CAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAA
CAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTT
GTCTGGAGTCGAAGATGTCGCATCCTCAGAAGCTCTGTGGTTCTTGTATG
GAACGTGGCTTGGTGTCTGGAGCTGACGATGGTTGCTCCCCTAATTTCTG
TTATTCTCTCCCCCGTTCCAAAATTTGTGGTACTCTTTTTTCTCACGGTC
CTCCCGTGTTCCTTGCCTCCGTGATTTCCCTGAATCCCATAGTCTCCGTT
CCGTTTCCTTGTCCCTCATTTTCTTTTTTTTTTTTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_n17.b1 MSMg01no415_n17.b1 CHROMAT_FILE:
MSMg01no415_n17.b1 PHD_FILE: MSMg01no415_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:21 2005
         (505 letters)



>mm_chr10_56784920_56785824
          Length = 905

 Score =  522 bits (270), Expect = e-152
 Identities = 303/318 (95%), Gaps = 7/318 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataatggctagtcaagattgcaatcgtaccaacagtgaatgatcctttaatactggggta 60
           ||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||
Sbjct: 311 ataatggctagtcaagattgcaatcataccaacagtgaatgagcctttaatattggggta 252

                                                                       
Query: 61  gatctgctttgatagagaggttggatgtggagtaggagggacctgtcagggacagactat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 251 gatctgctttgatagagaggttggatgtggagtaggagggacctgtcagggacaggctat 192

                                                                       
Query: 121 tgccattgctcttggttgccctcagagagagaaggtaaatctctattactgaagatatta 180
           ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 191 tgccattgctcttggttgccctcagagagcgaaggtaagtctctattactgaagatatta 132

                                                                       
Query: 181 tgcacttcagacacaaagtctagaggctaaagtctaaagtctaatctgaaactggcctca 240
           ||||||||||| |||||||||||||||||||||||||       ||||||||||||||||
Sbjct: 131 tgcacttcagatacaaagtctagaggctaaagtctaa-------tctgaaactggcctca 79

                                                                       
Query: 241 tagcctccttccttagagaaagctttcatggtgctgaaaggtacctgccaatctaccaaa 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 78  tagcctccttccttagagaaagctttaatggtgctgaaaggtacctgccaatctaccaaa 19

                             
Query: 301 ggaggaaagcaaccaaaa 318
           ||||||||||||||||||
Sbjct: 18  ggaggaaagcaaccaaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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