BAC Information

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BAC

Clone NameMSMg01-416C09
Chromosome10 (Build37)
Map Location 17,336,586 - 17,337,097
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416C09.T7 (MSMg01no416_c09.b1)MSMg01-416C09.TJ (MSMg01no416_c09.g1)
ACCAG512035AG512036
length742714
length of high quality
(start - end)
509 (37 - 545)512 (57 - 568)
definitionCHROMAT_FILE: MSMg01no416_c09.b1 PHD_FILE: MSMg01no416_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:43 2005CHROMAT_FILE: MSMg01no416_c09.g1 PHD_FILE: MSMg01no416_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTC
TCTTGTCTCATTTGTGGGGTTTCCCTTCTTCCTCTTTTTGTTGATTTTTT
ACTTCCTTATTCTGCAAAGCACAGCCTCTATTGCAGAGGTTCTCAACCTG
TGGGTCCCAAACGACCCTTTCATAGGGGTTGCCCAAGACCAGCAAAAAGC
ACAGATATTTATGTTATGACTGGTAATAGTAGCAAAATCACAGATCTGAA
GTAGCAATGAAAGTACTGTTCTGGTTGGAAGTCACCACAACATGAGGCAC
TATCAAGGGGCATTTTGAAAGCTGAGAACCATTGGTGTAGCAGCTTCTTG
AGATGGCATTTGTCTGAGACTTTGCATCCGAAGTGCCAGTTTCTTGCCTC
GTACTTGACTGATTCCTTGACGCCATAATAACTTTTAGGTTGGAAATTAT
TTCTCCAATAAAAAAAAAGTGAAAATGTCAGTTTCTTTGTTCTTTTTTTT
TTTCCTTTTTCTCTTAGAAGTGTGAGGTCAATTTTATTCTTGTTCTTTTG
CACATGGTCTTATTTCCTTCCCCCTTTCTGAACCCTTTAGGACCCTTTTC
TTCTGTCCGAACTTTCTGGAATTGGCACAATAATAAGGATTTTGATGGGA
AAACGCCCTGTGGATTCCATNCTGGCCTAAAGAAGGCAATTTTTGGGTTT
TGGAAATTTCACCCACTTGAAAGGGCCCCCCAAAGGTAAAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCATTTTAAAAAAATTAGTTTTCAGGCTATTTATCAATCCTTCA
GTAGGAGCACTTATATTAATGGCTAAGAATAAAATTTAAGTAATGAAGGG
GTTAAAAAATCATCATGCAAGCTAATCTTATGCAAAGCCTGCAGCCAATC
TCATTGAATTTTAAGTAAGGTTGTGAGTTCTTCCTTCTTTCCAGCTCAAA
TATATTTTACTAAACATGAAACTCAGTTTTTCACTATATATTTAAAAACT
CATTATTATTCATTATGGCATACAGATGGACCAAAGATGGCTTCTCCTGA
GACTTCATTCATCCTGATTCTTGGTCTTTGAGAAGAAAAAAAGGTGGACC
TGCATTAAACTCTGGCCTTGACCACTCTTAGGGCAAGTAATTCCTAAGAT
ATCACCAATATTCAGTAAAACAAATACATTTTAGGAGCTCANAGTTAACT
TTCTTTAATAATCCTATAATGAATTTTTCCTAGGAGCATTTGCCTGAGGA
ATTTGGAATCTGTTATTGGAATATAATAAATTCTAAGTTTTGAAAAGGGC
ACTTGGCTCAGCATGCCCTATAGTTTCAAATTCACTTATTGTAAATCCTT
ACAGTTTCTCACCTTATAAATGGATCTATTTGCCTCCAATGGAATATCAA
GATAAAGGGCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_c09.g1 MSMg01no416_c09.g1 CHROMAT_FILE:
MSMg01no416_c09.g1 PHD_FILE: MSMg01no416_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:43 2005
         (512 letters)



>mm_chr10_17336386_17337297
          Length = 912

 Score =  969 bits (501), Expect = 0.0
 Identities = 509/512 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattttaaaaaaattagttttcaggctatttatcaatccttcagtaggagcacttatat 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatttaaaaaaaattagttttcaggctatttatcaatccttcagtaggagcacttatat 260

                                                                       
Query: 61  taatggctaagaataaaatttaagtaatgaaggggttaaaaaatcatcatgcaagctaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatggctaagaataaaatttaagtaatgaaggggttaaaaaatcatcatgcaagctaat 320

                                                                       
Query: 121 cttatgcaaagcctgcagccaatctcattgaattttaagtaaggttgtgagttcttcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttatgcaaagcctgcagccaatctcattgaattttaagtaaggttgtgagttcttcctt 380

                                                                       
Query: 181 ctttccagctcaaatatattttactaaacatgaaactcagtttttcactatatatttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttccagctcaaatatattttactaaacatgaaactcagtttttcactatatatttaaa 440

                                                                       
Query: 241 aactcattattattcattatggcatacagatggaccaaagatggcttctcctgagacttc 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactcattaatattcattatggcatacagatggaccaaagatggcttctcctgagacttc 500

                                                                       
Query: 301 attcatcctgattcttggtctttgagaagaaaaaaaggtggacctgcattaaactctggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attcatcctgattcttggtctttgagaagaaaaaaaggtggacctgcattaaactctggc 560

                                                                       
Query: 361 cttgaccactcttagggcaagtaattcctaagatatcaccaatattcagtaaaacaaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgaccactcttagggcaagtaattcctaagatatcaccaatattcagtaaaacaaata 620

                                                                       
Query: 421 cattttaggagctcanagttaactttctttaataatcctataatgaatttttcctaggag 480
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattttaggagctcaaagttaactttctttaataatcctataatgaatttttcctaggag 680

                                           
Query: 481 catttgcctgaggaatttggaatctgttattg 512
           ||||||||||||||||||||||||||||||||
Sbjct: 681 catttgcctgaggaatttggaatctgttattg 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)