BAC Information

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BAC

Clone NameMSMg01-420K01
Chromosome10 (Build37)
Map Location 10,504,461 - 10,504,584
singlet/doubletsinglet
Overlap geneGrm1
Upstream geneStxbp5, LOC100039238, LOC665110, 9130014G24Rik, Rab32, EG382450
Downstream geneShprh, Fbxo30, Epm2a, EG666732, LOC100039343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420K01.T7 (MSMg01no420_k01.b1)MSMg01-420K01.TJ (MSMg01no420_k01.g1)
ACCAG515449AG515450
length714731
length of high quality
(start - end)
124 (75 - 198)584 (71 - 654)
definitionCHROMAT_FILE: MSMg01no420_k01.b1 PHD_FILE: MSMg01no420_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:32 2005CHROMAT_FILE: MSMg01no420_k01.g1 PHD_FILE: MSMg01no420_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGAAAACTGACTGGCACGCGGGAGANGNCAANGNNCNAGAAGGGGAACTC
ANTNNAAAAATTCTTTCCACCACATTTAGTGAGTGGGAGGATTCTTTTAT
ATTTGAGAGGGAGGTGGTTTCCCATAAATGCTATTATTTTGGGATAGCAC
TGAGAAAATATTCCAGCCACTTCTGTGGAAGCCAGATGAGAATAATATCC
TTTTTGCAAGCACTGCAAAATTAATCTCTTACTTCATAACATACCACTCT
TGTAATGGATTGACTGTTTCGTCGATTCCACTTTTGNTGNAAACACAGCC
CAGAGGTCCTTGCACCCACACATCTCCAGGGAGACCAAGAATGTTCAGCA
GGCAGGATTGCCTTTCCAATAGGCAAGATGTACAACCTGTTCTTCCATCT
AGAAAGCTGGGAATCAGAGTTGATTAGTATGGGCTGGAGATATGACTCAG
TGGTTAAGAGCATTGACTGCTCTCCCAAAGGTCCTGAGTTCAATTCCCAG
CAACCACCTGGTGGTTCACAACCATCTGTAATGCCTCATACACATAAAAT
TAATGAATTATTTTCTTTACAAATTAAGTAAATAATTTAAAAGCAAACTA
AGTGAAAAGAAAATATTTTTTGTTTAGCAGGCCAGGGGACTATTTTTATC
TGTGTGGGCCAGGCCATTATCAGGCCCCCTAAAATCAAGAACCAGAAGTG
GCTAAGTTATTAAA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACAGCAGTCAGAATGTCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCTGT
CTGGCGGTTCCTCAGAAAATTGGTACATAGTACTACTGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTAGA
TATTAGCCCATAACCTAGGATACCCAAGATATAAGATACCATTTCCTAAA
CACATGAAACTCACGAAAATGAATCATTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_k01.b1 MSMg01no420_k01.b1 CHROMAT_FILE:
MSMg01no420_k01.b1 PHD_FILE: MSMg01no420_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:32 2005
         (124 letters)



>mm_chr10_10504261_10504784
          Length = 524

 Score =  232 bits (120), Expect = 5e-66
 Identities = 123/124 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttagtgagtgggaggattcttttatatttgagagggaggtggtttcccataaatgctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttagtgagtgggaggattcttttatatttgagagggaggtggtttcccataaatgctat 265

                                                                       
Query: 61  tattttgggatagcactgagaaaatattccagccacttctgtggaagccagatgagaata 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 264 tattttgggatagcactgagaaaatattccagccacttctgtggaagccaaatgagaata 205

               
Query: 121 atat 124
           ||||
Sbjct: 204 atat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)