BAC Information

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BAC

Clone NameMSMg01-420L09
Chromosome10 (Build37)
Map Location 37,756,555 - 37,757,144
singlet/doubletsinglet
Overlap genenone
Upstream geneMarcks, LOC100040846
Downstream geneLOC100040915, Lama4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420L09.T7 (MSMg01no420_l09.b1)MSMg01-420L09.TJ (MSMg01no420_l09.g1)
ACCAG515512AG515513
length713753
length of high quality
(start - end)
---589 (67 - 655)
definitionCHROMAT_FILE: MSMg01no420_l09.b1 PHD_FILE: MSMg01no420_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:38 2005CHROMAT_FILE: MSMg01no420_l09.g1 PHD_FILE: MSMg01no420_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGATCACCAAAAGTTGGGCCGCTAGANGANNNACAATCGGGAGCGGAGGG
NGNAANNNATTTCTTTCAAAAGAAGCNGGGNANAGCACGNNGNACCACCA
AAGAGGACGCAGGAAGGATGGGACCGCGAAGCCACTATTCCTACCCAGGA
GGGGGAANAANAAANTAATCTGCTAATAAACAATAATTAACCACTTACTG
TAGAACAATAATACTTCCAGGAAGAAAAACATTCAAGATAATAATGATGA
CGTTGTTTTTAAAGGCTGCTCCTGGTTGAGAACTGCCGGCCCAACCGATG
AGTTGGGCGATGAAAAGTTTTTTTTTTATGGCGAAGAAAAAAGGCCGAAA
GCGTCAGACAGCTACAGCGATGGCCACGGAGAAGTTGTTTTTATAGAAGA
CACTGTTTTAAAAATCCTCCTTGACAAAAAACTGCTGGACGATTCTTCTA
GACGAATAGTTGGAGGAGCTGTTATTCTAAGTATTATTGTTATTCACACG
ATGAACACCCCCTTTAACCAGGCCGTACCACACCATATTATATGCTTGTG
ATCAACAGGAAACACTTTGTCCCCATCTTAGTGGGAGTATTTCCCCATAC
GAGTGGAAGAGAATACCCAGGTCTTTCCCGCTGCGATCTCTCATCACATT
TCTGATTTTTTTGTACAGCGCGGCCCAATTTTCTGAAATTTTCCTGAATG
ACCACGGAAAAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTCAGTAAACCCTTGAGAATGGTTCCCAAACTG
CCTGAATAATAAAATTAATTTCCTTGGGGGAAAAGAAAGCTTAAGCAAAA
TGTACAAGGTTCCATTCTTTGAGGTTCAGTCCCTTGAAAAGTGCTGACTT
GGTAACATATTTGATCAATACAAGAATACTACCAAAAACTAAAGAATATT
ATTTGTAATAGTAGTTGTTAGAGAAATTAGTAATTAAATAGATGACCATT
TGGGGTAGATAAATAACATTAGTATTACAGTCCAATAGAATCCATTAAAT
GGATTAAGTAGATACAGGAAAATGTACTTGATGATTGGACACTTTTGTTT
CCTCAGAGCCAGATGATTTAGACTAAACACATTGTAAAGTAAAAAATGCA
AATTTAAAAAAGAAACTTTGTCTTGATTTAATCCTTCTCTTGCACCCTGA
TCCTTTTTCATTTCCAGCCCCCTTTTCAGGTAACCTAATTCATCCTTGGC
TGCTGGATGGATACAGGTAGTACCCAAACTAGGGGACTTAAAAGGGTGGA
GGACCCACTGAGAAGCACCATCTTGGGTGAAACTCCAGAGAGAATGGAAG
AAGTTACAGTATCCTGCACAGTAAGCAATGAACAGCATTAATGTCAGTAC
TAGCTTAATTTTTGGAGGCAGTTGTTGCACGAGGNTCACTTAAGATATAG
AAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_l09.g1 MSMg01no420_l09.g1 CHROMAT_FILE:
MSMg01no420_l09.g1 PHD_FILE: MSMg01no420_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:39 2005
         (589 letters)



>mm_chr10_37756547_37757536
          Length = 990

 Score = 1110 bits (574), Expect = 0.0
 Identities = 586/590 (99%), Gaps = 1/590 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcagtaaacccttgagaatggttcccaaactgcctgaataataaaattaatttccttg 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 598 cttcagtaaacccttgagaatggttcccaagctgcctgaataataaaattaatttccttg 539

                                                                       
Query: 61  ggggaaaagaaagcttaagcaaaatgtacaaggttccattctttgaggttcagtcccttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ggggaaaagaaagcttaagcaaaatgtacaaggttccattctttgaggttcagtcccttg 479

                                                                       
Query: 121 aaaagtgctgacttggtaacatatttgatcaatacaagaatactaccaaaaactaaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aaaagtgctgacttggtaacatatttgatcaatacaagaatactaccaaaaactaaagaa 419

                                                                       
Query: 181 tattatttgtaatagtagttgttagagaaattagtaattaaatagatgaccatttggggt 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 418 tattatttgtaatagtagttgttagagaaattagtaattgaatagatgaccatttggggt 359

                                                                       
Query: 241 agataaataacattagtattacagtccaatagaatccattaaatggattaagtagataca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agataaataacattagtattacagtccaatagaatccattaaatggattaagtagataca 299

                                                                       
Query: 301 ggaaaatgtacttgatgattggacacttttgtttcctcagagccagatgatttagactaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ggaaaatgtacttgatgattggacacttttgtttcctcagagccagatgatttagactaa 239

                                                                       
Query: 361 acacattgtaaagt-aaaaaatgcaaatttaaaaaagaaactttgtcttgatttaatcct 419
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 acacattgtaaagtaaaaaaatgcaaatttaaaaaagaaactttgtcttgatttaatcct 179

                                                                       
Query: 420 tctcttgcaccctgatcctttttcatttccagcccccttttcaggtaacctaattcatcc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tctcttgcaccctgatcctttttcatttccagcccccttttcaggtaacctaattcatcc 119

                                                                       
Query: 480 ttggctgctggatggatacaggtagtacccaaactaggggacttaaaagggtggaggacc 539
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 118 ttggctgctggatggatacaggtagtacccgaactaggggacttaaaagggtggaggacc 59

                                                             
Query: 540 cactgagaagcaccatcttgggtgaaactccagagagaatggaagaagtt 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  cactgagaagcaccatcttgggtgaaactccagagagaatggaagaagtt 9


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 990
Length adjustment: 10
Effective length of query: 579
Effective length of database: 980
Effective search space:   567420
Effective search space used:   567420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)