BAC Information

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BAC

Clone NameMSMg01-421H23
Chromosome10 (Build37)
Map Location 103,350,941 - 103,351,353
singlet/doubletsinglet
Overlap genenone
Upstream geneCart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421H23.T7 (MSMg01no421_h23.b1)MSMg01-421H23.TJ (MSMg01no421_h23.g1)
ACCAG516110AG516111
length763761
length of high quality
(start - end)		450 (81 - 530)412 (85 - 496)
definitionCHROMAT_FILE: MSMg01no421_h23.b1 PHD_FILE: MSMg01no421_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:41 2005CHROMAT_FILE: MSMg01no421_h23.g1 PHD_FILE: MSMg01no421_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTATATTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAG
GATCCGCGGAATTCTCAACAGATTACCTTAGAACAGCTGAGAACCACTTA
AATAAATGTTCAATATCATTAGTCATAAGGGAAATGCAAATCAAAATATC
TCTGAGATTCAATCTTATACTCATCAGAGTAGTTAAGGTAGAAAGCTTAA
GTGACAGCACATACAGGTGAGGATATGGAGCAAGGGGAACACTCCTTCAT
TGCTGCTGGGAATACAAACATGTACTTTCAAAATTGGTTTGACAGTGTCT
CAGAAAATTGGGAATAGTTCTAACCCAGGACCCAGTTATACCACTCCTGG
GCATATACCTAAAAGATGACCCAGGATGCAACCGAGATACTTGCTCAACT
ATGTACACAGAAGCTTTATTCATAATAGACAAAAAACTGGAAACAATGTA
GATGCCCTTCAACTACAGATAAAGAAACCATGGTCTATCTACAGAACACA
ATACTATTTAACTATTAAAAACAAAAAAGTTATGAAATTTATAGGCAAAT
GGATGAAACTTGAAATATCATATTAAGTGGGGAAGAATAGACCCGAACAA
GGCAGGTTGGGACACGCCCTTTATTCCCGCACTTCGGAGGGCAAAGCAAG
GTGGAATTTCTGAGTTCAGGGCAACTTGGCTTTTGGTTCCCGAAAGCCCA
GGGTTTTTCAAAAAAACCCTGTTCTAAAAAAAAAAGAAAATAAAAACACT
CCCTCCTATACTG

CCAATTATTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGAAAGACTACTGT
ATTTACTTGAAAAAAAAAAAGAGTCCCAAATTTCTAAGTGTATTTTCGTA
CAATGTGGGAGTTTGACAGTGTTAGACATCTTCTTGTAAGTTCTATCTCG
ATTATCATATAAAGATGTTGCCTTTGTAACAGCAGAGACAGTGATTCTAG
CAATCACATAAGAAAGAAGGTCAATTGGATTAGTGCATCTGTAAACAAAA
GAAATACATGAGATAAAGGCAGCAACTAGACAGTTGGAGAAGAAAGAAAA
TAATTCTTTCAGATATACTGCTAACAACTTAATTGTCTAGTTCTAGTTTT
AAGAAATGTATGAGAATACATTTCTGTACTGGAAGAGATGAATTGTTTAG
ATATATATTCATAGTAGTATCTTTACACCCATATGAATAACTTTCTGACA
TAAAACATTCGGTCAAAAAAACTGCCTTCAGAATTCCATAGATAGTTCTA
TCTTATTTCCCAAAAAAATATGGGTTAACATGGTATAAAATTTTTAATGT
ACTAAAATGCCAATGTTTTTCTGAAAAAAGGGGTTAAAAAATTTATTTAT
CTTTTTTCAGAAAAATTGTAATTTGGTTAAATTTTTTGGGGGGCAAAAAT
CTTTTGGGCCCCTATTTTCCCCCCTTTTTTTTTGGGGGGGGTTCTTCCTA
CAATAATTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_h23.g1 MSMg01no421_h23.g1 CHROMAT_FILE:
MSMg01no421_h23.g1 PHD_FILE: MSMg01no421_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:41 2005
         (412 letters)



>mm_chr10_103350741_103351553
          Length = 813

 Score =  659 bits (341), Expect = 0.0
 Identities = 396/415 (95%), Gaps = 5/415 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgaaagactactgtatttacttgaaaaaaaaaaagagtcccaaatttctaagtgtatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 613 actgaaagactactgtatttacttgaaaaaaaaaaagagtcccaaatttctaaatgtatt 554

                                                                       
Query: 61  ttcgtacaatgtgggagtttgacagtgttagacatcttcttgtaagttctatctcgatta 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttcgtacaatgtgtgagtttgacagtgttagacatcttcttgtaagttctatctcgatta 494

                                                                       
Query: 121 tcatataaagatgttgcctttgtaacagcagagacag--tgattctagcaatcacataag 178
           ||||||||||||||||||||| ||||||| || | ||  |||||||||||||||||||||
Sbjct: 493 tcatataaagatgttgcctttataacagcgga-a-agggtgattctagcaatcacataag 436

                                                                       
Query: 179 aaagaaggtcaattggattagtgcatctgtaaacaaaagaaatacatgagataaaggcag 238
           ||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 435 aaagagggtcgattggattagtgcacctgtaaacaaaagaaatacatgagataaaggcgg 376

                                                                       
Query: 239 caactagacagttggagaagaaagaaaataattctttcagatatactgctaacaacttaa 298
           |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 375 caactagacagttggagaaggaagaaaataattatttcagatatactgctaacaacttaa 316

                                                                       
Query: 299 ttgtctagttctagttttaagaaa-tgtatgagaatacatttctgtactggaagagatga 357
           || ||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||
Sbjct: 315 ttatctagttctagttttaaaaaaatgtatgagaatacatttctttactggaagagatga 256

                                                                  
Query: 358 attgtttagatatatattcatagtagtatctttacacccatatgaataactttct 412
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 255 attgtttagatatatattcatagtagtatctttacacccatatggataactttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 813
Length adjustment: 9
Effective length of query: 403
Effective length of database: 804
Effective search space:   324012
Effective search space used:   324012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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