BAC Information

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BAC

Clone NameMSMg01-423A22
Chromosome10 (Build37)
Map Location 103,974,643 - 103,975,180
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423A22.T7 (MSMg01no423_a22.b1)MSMg01-423A22.TJ (MSMg01no423_a22.g1)
ACCAG517302AG517303
length767762
length of high quality
(start - end)		541 (30 - 570)538 (60 - 597)
definitionCHROMAT_FILE: MSMg01no423_a22.b1 PHD_FILE: MSMg01no423_a22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:39 2005CHROMAT_FILE: MSMg01no423_a22.g1 PHD_FILE: MSMg01no423_a22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATATTAACTGA
GGTGTGTTTTCATTGCTGCAGCATATTTGGGTCAGAGATTTACTGCAGCA
AAAGACATGCATCATCATGCTCATTTCATTTGGTTTTCCAGATTTATTCC
TATTTGTAAATCGTTAATTTTTTAACTTATTCTTTAATCTTTTATTTTAT
TTTATTTTCACAGTCCAGACTTTGCCACCCTGCCAGTCCACCCTCTTGAC
TGTTCCACATCCCTTTCCTCCTCCCCTTGTCTCCAAGAGGATGTCCCCAA
CTCACTGGACCTCCCTATTCCATGGGGTCTCCATTCTCTTTGAGGGTTAG
GTGCATCTTCTCTGAATGAGTCCAGACCCAGCAGTCCTTTGCTGTATATG
TGTTGAGGGCCTCATATCAGCTGGTGTATGCTGCCTGGTTGGTGGCTTAG
TGTCTGAGAGATCTCAGGGGTCCAGGTTAGTTGAGATTGCTGCTCTTCCT
ATAGGGTATCATTACCCTATAGATAGACCCTATATAACTACCTATAGGGT
AACAATACCTATAGGGATAATGATTTTATTATATTCTAGCTACCAGATTG
TAAATGTCCCTTTTATTTCCTCTGATGAAAGGATGAGTTGGAAATCTTCA
CCCACCTTAATCAACACTTGGCTGGAACTTGAGCCCAAAGATTTCCTTCC
CAATATTTTTTAACCTCAGGCAAAAACCTTCTGTCCCCGGAAAACCAAAT
TTTCCGTTAGGCTAAAA

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXATCATTTTTATTTGGCAAAGTTAAGAACTGGCTTTACATAG
AGAGATTCCATTAAAATTGATTGTCTTCAGCTGCCAAACTTCTTAACACA
ATATACTTAAAACTGGGTTCTTAATGAGGCTGTTGGTGTCAAATGGTAGA
ACAGGCTGATAGAGCACTTATCACAGTAGGTTTTGAGATATAAGTCTATG
GATTGGATAAAGGAGGTACGCATAGCAGAAATCATTGTAAATTCAAAGGC
AAACAGTCTGGGGAATTAGACAAAAGTAATGTTATATGCAGAAATTTTGT
AATATATACAGCTAGATGACTGGCATTTTTATCATGTGTACTGTATTTAA
ATTATGTAGCTAAATACAATTATGTCCCCTTGAACCCAACTCCCAGGGTT
CGTCTTCTTTTTGTATTAATATTTAATATGATTGGACAGAGAAAATTATA
CTACCAAATTGAGACAAATTCTTTGTTTGTACTAACAAAGCATAGATTTC
TTGAGATTATTAAACACATTGGTCTAACGGGTCACAGATCATATCCATTA
AAATAGCCATGTTTATTCATCTGGGNTGTCTCATTAATTCATTAGNACAT
ATNCAGTGTATATGGACCTGTGTACAGATTTTTGATTGAATATACCTATA
TGCAGTTTATTTTCTATTTTTATCCCAGCTTTATTACCCACCATATATCC
AATTTCCCAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_a22.g1 MSMg01no423_a22.g1 CHROMAT_FILE:
MSMg01no423_a22.g1 PHD_FILE: MSMg01no423_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:39 2005
         (538 letters)



>mm_chr10_103974443_103975380
          Length = 938

 Score = 1017 bits (526), Expect = 0.0
 Identities = 535/538 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcatttttatttggcaaagttaagaactggctttacatagagagattccattaaaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 atcatttttatttggcaaagttaagaactggctttacatagagagattccattaaaattg 679

                                                                       
Query: 61  attgtcttcagctgccaaacttcttaacacaatatacttaaaactgggttcttaatgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 attgtcttcagctgccaaacttcttaacacaatatacttaaaactgggttcttaatgagg 619

                                                                       
Query: 121 ctgttggtgtcaaatggtagaacaggctgatagagcacttatcacagtaggttttgagat 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cagttggtgtcaaatggtagaacaggctgatagagcacttatcacagtaggttttgagat 559

                                                                       
Query: 181 ataagtctatggattggataaaggaggtacgcatagcagaaatcattgtaaattcaaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ataagtctatggattggataaaggaggtacgcatagcagaaatcattgtaaattcaaagg 499

                                                                       
Query: 241 caaacagtctggggaattagacaaaagtaatgttatatgcagaaattttgtaatatatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 caaacagtctggggaattagacaaaagtaatgttatatgcagaaattttgtaatatatac 439

                                                                       
Query: 301 agctagatgactggcatttttatcatgtgtactgtatttaaattatgtagctaaatacaa 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 438 agctagatgactggcatttttatcatgtgtactgtatttaaattttgtagctaaatacaa 379

                                                                       
Query: 361 ttatgtccccttgaacccaactcccagggttcgtcttctttttgtattaatatttaatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttatgtccccttgaacccaactcccagggttcgtcttctttttgtattaatatttaatat 319

                                                                       
Query: 421 gattggacagagaaaattatactaccaaattgagacaaattctttgtttgtactaacaaa 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 318 gattggacagagaaaattatactaccaagttgagacaaattctttgtttgtactaacaaa 259

                                                                     
Query: 481 gcatagatttcttgagattattaaacacattggtctaacgggtcacagatcatatcca 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gcatagatttcttgagattattaaacacattggtctaacgggtcacagatcatatcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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