BAC Information

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BAC

Clone NameMSMg01-423L06
Chromosome10 (Build37)
Map Location 12,262,737 - 12,263,078
singlet/doubletsinglet
Overlap geneUtrn
Upstream geneEG666732, LOC100039343
Downstream geneLOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423L06.T7 (MSMg01no423_l06.b1)MSMg01-423L06.TJ (MSMg01no423_l06.g1)
ACCAG517797AG517798
length747742
length of high quality
(start - end)
410 (32 - 441)491 (65 - 555)
definitionCHROMAT_FILE: MSMg01no423_l06.b1 PHD_FILE: MSMg01no423_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:27 2005CHROMAT_FILE: MSMg01no423_l06.g1 PHD_FILE: MSMg01no423_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGTCGCTATACGACTCACTAATCAAAGAGGATCCGCGGAATTCCACAAA
TTCCGCAAACTACACATCTATAAAATATATACACAATGGCCTAAGTTAGA
CACACGCAGGCCCCCTGTCTATTCAGTCTCTTTGAACCTCTGTGAGATCA
AGGTTGTTGTTTTGTGGAGTGTCTTGTGGTATCCTTGGTCTCTCTGGCTC
CTACAATCCTTCCTCCCTGTCTTCAGTAGGATTGTCAAGATCCACCTAAT
GTTTGGCTGTGGGTCTCTGCATCTGTTTCCATCTGTTGCTGGATGAAGTC
TCTCTGATTTTTTTTGGTCAGACACCAATCTATGCATATAGCTGAATATC
TTTGGGCATAATTTCATTGACATTTTTTTTTTGCCTGTTGTGTTTGCTTC
TAACCTAGGTCCCTGGGCCATCCAGCCTCTGGTTTCTGTTCCTCCAGGTA
GCACCAGGGGTGAGCTCCATCACGTGGTGTCATGTTGTGTTTCTCAAGCT
GACCCTTTTTTTGGTCAACCAATTCGTAATAATTCTCTGCCACCATTACT
CCATTACATCCCGTTGGTCAGATAACCCACTGTTTTTTACCCCTTTTCTT
TAACGCTTGTTTTTTTTACCTCTTTTTTGTTATTTCCCCTCCGTATCTTT
TTTTTCTTTTTTCCTTCCTTCCTTCTCCTATTATCCCCCCTTTTTATTCC
CTTCCCCCTTTTTTTTTTTTCTCGTTCTTCTTTTTTTTCTCCTATTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTACATCCTCAACTCACAGGCAGCAGACTTGAACATC
TGAGATCTCAAAGCTCATACCCTAGTGATGAACCTCTTTCAACCAAACCA
CAGCTACTCTAACAAGGCCACACCTCCTAATAGTGACCCTCCTGATGTGC
CTCTAGGAACCACTTTCTTTCAAAGCACCAGGCTTATTTTGTCCAGTTTC
TTTTAGCTTAACTGAGTTTTGTTTTAATTCAGCTTACTTTTGAGATGGGG
TATTCTAGAGTTTTTCATTGTGTTGATCAGTTTGTAATCAAGTTCTTGGT
GATCCTCCTGCCTCAACCTCCCAAGTGCTGGGCAGTTGCAGGAATGAGCC
CTCACACTCAGCCAATAGCAAGTATAGTTAACAGTAGAAACTGGTTTCAT
AAAGTCTCCTCTGGAGAAATTGCATTATATCTGTGATTTCAAAACCTAGT
TTAAGCTTAAGGAGAAACTGAGGTTGTGTTCGGGTTTGCAAGCTCCTGCG
CAGCATGAGTGGATTTGGGTGGAGGGAGATACTCACTATGATCTTCCTTG
ACAGACCTCAACTTTCCACCCTTACTGTTTATTTTCACATATATTTACCT
CTTTTTTTTACCTTTTACTGCCCCCACCATTGTTAAGACCTCCCCTTTTT
GTTTCTTCGCTTTTTTTCTTCCTTTTTTTTCCCCGCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_l06.g1 MSMg01no423_l06.g1 CHROMAT_FILE:
MSMg01no423_l06.g1 PHD_FILE: MSMg01no423_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:27 2005
         (491 letters)



>mm_chr10_12262189_12263078
          Length = 890

 Score =  605 bits (313), Expect = e-177
 Identities = 337/347 (97%), Gaps = 5/347 (1%)
 Strand = Plus / Minus

                                                                       
Query: 145 accactttctttcaaagcaccaggcttattttgtccagtttcttttagcttaactgagtt 204
           ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 accactttctttcaaa----caggcttattttgtccagtttcttttagcttaactgagtt 835

                                                                       
Query: 205 ttgttttaattcagcttacttttgagatggggtattctagagtttttcattgtgttgatc 264
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 834 ttgttttaattcagcttacttttgagatggggtattctagagttggtcattgtgttgatc 775

                                                                       
Query: 265 agtttgtaatcaagttcttggtgatcctcctgcctcaacctcccaagtgctgggcagttg 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 agtttgtaatcaagttcttggtgatcctcctgcctcaacctcccaagtgctgggcagttg 715

                                                                       
Query: 325 caggaatgagccctcacactcagccaatagcaagtatagttaacagtagaaactggtttc 384
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 714 caggaatgagccctcacactcagccaatagcaagtatag-taacagtagaaactggtttt 656

                                                                       
Query: 385 ataaagtctcctctggagaaattgcattatatctgtgatttcaaaacctagtttaagctt 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ataaagtctcctctggagaaattgcattatatctgtgatttcaaaacctagtttaagctt 596

                                                          
Query: 445 aaggagaaactgaggttgtgttcgggtttgcaagctcctgcgcagca 491
           ||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 595 aaggagaaactgaggttgtgttccggtttgcgagctcctgcgcagca 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 890
Length adjustment: 10
Effective length of query: 481
Effective length of database: 880
Effective search space:   423280
Effective search space used:   423280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)