BAC Information

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BAC

Clone NameMSMg01-424I11
Chromosome10 (Build37)
Map Location 41,422,773 - 41,423,010
singlet/doubletsinglet
Overlap genenone
Upstream gene9030224M15Rik, Cdc40, Wasf1, Gpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461
Downstream gene2410017P07Rik, Sesn1, Armc2, 1700016J18Rik, LOC624784, Foxo3a, Lace1, LOC666540, Snx3, Nr2e1, c222389, Ostm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424I11.T7 (MSMg01no424_i11.b1)MSMg01-424I11.TJ (MSMg01no424_i11.g1)
ACCAG518427AG518428
length754763
length of high quality
(start - end)
239 (77 - 315)85 (136 - 220)
definitionCHROMAT_FILE: MSMg01no424_i11.b1 PHD_FILE: MSMg01no424_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:30 2005CHROMAT_FILE: MSMg01no424_i11.g1 PHD_FILE: MSMg01no424_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNACCTATXXXXXXXXXXXXXXXXXXXXXXXXXATACAAAATAGGATCC
GCGGAATTCCTGTTACATGTGACGGCTGCTTTCGGCTTATCTAGAACTCC
ATGAGCTGTCCCTGTGAGAAATCTGAAACGTTCTCAGTCCATAATTCTCT
TCTTCCTCTCAAAAGAAAACAAAACTCAGTATACAAATGGGTGAGGTAAA
GACATGGGGAAAAAAAGCTCTCTGTGCAAACATGAATAAAACTAACAGTA
ATGTGTTAGTAAACCTGAGGCAGTCCCCGCTTACCCCGCATCTATGTCTG
CACGCTTGTGTAATTTATCATCCCGGAGGCTGAGGCAGGGGGATCCTGGG
ATCCAGGCTAGCCTCTGTTACACGATGAGACTTTGTCTCAAAAGACACGG
TTTTGTAACAATAAAGCAGGGAGGAGAAAGAGGAGAGGAAGGAAGGAAGG
AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAATGAATTAC
ACCCTCTTCCTCCTTTCTTATCCTAATCCTCGGCCTGTCCCCCCATCGCC
TTTTTCCCCCCGCTTCTCTTCACATATTTCCCCGTCGCTCCGTTTTTCCG
TCTGCGCGCGCCCTGCATTATCACCCCTAATCTCCCACTACACCGCTATC
GCCCCGTTTTTTTTCTTTTTTTCTCCCCTATACCCATGCCCCCCCTCCAT
TCCACCTCTCTGCCTCTTTATACACCCCTTACCCCTCACATCCTCTTATA
CTAC
TTCTCCGATGATGTGGGAAGGCGGGCGGCCGCCTTTTCAACAACATGTAG
GTGAACTATAGAATGACAAGCACAATTCTAGACCAGCCATAGCTACAAAC
TGAGACCCTGTCTCAAAAACAGAACAGAACACAACAAGTGTTAGGACTCT
GCTTTACATGAACTGACTCTAAATATTAGTGTCTAAATCATTCACCTGAT
AATAGTCTACACTTCTTAGTCACTGCAGGCCCACCATGAAACAGAGCTCT
AACGTATGAGGATGCTCTATTATGTCAGGTCTGCATCAGAGGATGCCCCG
AATGTGGTACTTGTGGCTTTTTTTTTTCTTCTTATTGATAGAGAGAGTTT
CAAAGACCTAAAACATCTCACCATTATGCTTTACCTTACATAGACTTCTT
GTACGCCCTTGATTAATATGCCACACAGCCGCACTTCTTATCCCCCCACA
TTTTTATTCTACTATTTAACTCTTTATATTTTACTACATTTGATTTCTTC
ACAACTTTGCACTTCCTATTCTCCTGTTACAACGATCGCCTTTTGTCTGC
CTCAAACCCTTTTTTTTTGTACTGTTTTTTTTATTTCCCTTTTTCCTTTG
TCCCTTTTTTCTACACCTCTACCTCCCTTTCCCCCCTCTTTATTCCCTCC
CCCTTTCCTGTCTTTTCCCCTCATGTTTTCCCTTTTATCCTTCTTACAAA
ACTTCTTTTTCCCCTCTCCGCTTCTTACATTCTTCACCCTCGCTTCTGGA
CCTTGCTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_i11.b1 MSMg01no424_i11.b1 CHROMAT_FILE:
MSMg01no424_i11.b1 PHD_FILE: MSMg01no424_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:30 2005
         (239 letters)



>mm_chr10_41422573_41423211
          Length = 639

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctttcggcttatctagaactccatgagctgtccctgtgagaaatctgaaacgttctca 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctttccgcttatctagaactccatgagctgtccctgtgagaaatctgaaacgttctca 260

                                                                       
Query: 61  gtccataattctcttcttcctctcaaaagaaaacaaaactcagtatacaaatgggtgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gtccataattctcttcttcctctcaaaagaaaacaaaactcagtatacaaatgcgtgagg 320

                                                                       
Query: 121 taaagacatggggaaaaaaagctctctgtgcaaacatgaataaaactaacagtaatgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 taaagacatggggaaaaaaagctctctgtgcaaacatgaataaaactaacagtaaggtgt 380

                                                                     
Query: 181 tagtaaacctgaggcagtccccgcttaccccgcatctatgtctgcacgcttgtgtaat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtaaacctgaggcagtccccgcttaccccgcatctatgtctgcacgcttgtgtaat 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)