BAC Information

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BAC

Clone NameMSMg01-424J15
Chromosome10 (Build37)
Map Location 56,112,124 - 56,112,369
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041927, D630037F22Rik, 1700060H10Rik, EG629732, Gja1
Downstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424J15.T7 (MSMg01no424_j15.b1)MSMg01-424J15.TJ (MSMg01no424_j15.g1)
ACCAG518483AG518484
length742750
length of high quality
(start - end)
504 (79 - 582)246 (73 - 318)
definitionCHROMAT_FILE: MSMg01no424_j15.b1 PHD_FILE: MSMg01no424_j15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:36 2005CHROMAT_FILE: MSMg01no424_j15.g1 PHD_FILE: MSMg01no424_j15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTAGTCCTACTGTCGCNNNNCGACTNCCTTTCCGGAGAGGATCCGCGGA
ATTCATGTATTCCCACGTACAATATAGNAACTGTCACCCGTTGTTCTTAC
ATGCCCTTACACCACTACCTGAAATAATGTTTCCTCTTTGTCCTAATTAG
TTTTTACTGTCACATTAACACAACCTAGATTCCTCTGAGAAGAGAGAACC
TCACTTGAAGAATTGCCTCCTTCAGATTGTTCTGTGGGCATGTCTGTGAA
ATATTTTCTTGATTGATCATTGATATGAGAGGACCCAGTCTACCTCAGGT
ACCACCATCTCCTTGTTTGTGCCTGTGGGCAAATCTGTAGGGCATTTTCT
TAATTGATGGTTGATATAAAAATGCCCAACCCATTATGGGCATTGACAGC
TCAGGGCAGGTATCCTGGGTTAAGTATGAAACAGGTTGAGCAAGCCAGCA
AACTGCATGATTCCATGGCTTTGGTTTCAGGGCCTACCTTCAGGTTCCTG
CCTTCACTTCCCTCACTGATTAAATATAACTTGAGAGTTGTAAGCTGAAA
TAAACAATCAGCTGCCCAAGTTGGTTTTGGTCATGGAGTTTTATCATAGC
AAGAGAAACCATAACTAGGACTCTGGTAAAACACACTACCACACAAAATA
TATATATCTTTTTAATTAAATTTCCAAAAGACATCTTAGGCTTTTTAAAC
CAGAGAATTGAAACCAAGGTCAAAGTTTTCAGTTACACAGCG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAGAAATTCAGCCTCAGCTACATAGTAAGTTTGAGGT
CTGAGGTCAGCCCAGCCTGGGCTACCTGTCTCAAAACACAAACAGAAAAT
GTAATGACATCATCTCTCTATATATGTATATTAGAAAAATAAACAACATA
AATGTTCCAATAACTGGAAGGATTAATTTTGTATGCTTTTGGGAGCAGGA
ACTAAATCATTCATTCATTCTCTACTTTATAACACCTGATGGGTATATGT
AAAATAAAGTGGTTTCTTCTATTTTTAAGGTTTCCTGATGTCCACTGAGG
AGTATAAAAAGATGCTCGTTAAATTTGACCCTGTTTCATGTATTTCTGTA
TGTTCAAATTTTGTACACACAATGTAAGTATGCTGTTTTCTTCTGCTGGA
GATGCAGCCAATGGGAGTTGCTTCGAGGGGGCTTACTGTGTAGTCAATGT
GGACTGGGGCTCACTGTGTAACTAGTTTTTTTTTTTTTTTTAAAGATTTA
TTTATTTATTTATTTATTTATTTATTCATTTTTATTTACTATATGTAAGT
TCATTGTATCTGTCTTCATACTCTCTTTATTATTGTATCACATCCTATTA
TCCCTTGTTTGTCTTTTTTCCAGTTCGTTTTCTCCTAACCGTTTCCTCTT
TTCTTTTCAATTTTTCCTCTTACCCCTTTTTTTCTCCACTTTTTTTCCTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_j15.g1 MSMg01no424_j15.g1 CHROMAT_FILE:
MSMg01no424_j15.g1 PHD_FILE: MSMg01no424_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:36 2005
         (246 letters)



>mm_chr10_56111854_56112499
          Length = 646

 Score =  476 bits (246), Expect = e-139
 Identities = 246/246 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcctcagctacatagtaagtttgaggtctgaggtcagcccagcctgggctacctgtctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 agcctcagctacatagtaagtttgaggtctgaggtcagcccagcctgggctacctgtctc 457

                                                                       
Query: 61  aaaacacaaacagaaaatgtaatgacatcatctctctatatatgtatattagaaaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aaaacacaaacagaaaatgtaatgacatcatctctctatatatgtatattagaaaaataa 397

                                                                       
Query: 121 acaacataaatgttccaataactggaaggattaattttgtatgcttttgggagcaggaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 acaacataaatgttccaataactggaaggattaattttgtatgcttttgggagcaggaac 337

                                                                       
Query: 181 taaatcattcattcattctctactttataacacctgatgggtatatgtaaaataaagtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 taaatcattcattcattctctactttataacacctgatgggtatatgtaaaataaagtgg 277

                 
Query: 241 tttctt 246
           ||||||
Sbjct: 276 tttctt 271


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)