BAC Information

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BAC

Clone NameMSMg01-425D05
Chromosome10 (Build37)
Map Location 29,496,462 - 29,672,018
singlet/doubletdoublet
Overlap geneLOC623064
Upstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12
Downstream geneLOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425D05.T7 (MSMg01no425_d05.b1)MSMg01-425D05.TJ (MSMg01no425_d05.g1)
ACCAG518939AG518940
length742744
length of high quality
(start - end)
495 (63 - 557)483 (71 - 553)
definitionCHROMAT_FILE: MSMg01no425_d05.b1 PHD_FILE: MSMg01no425_d05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:21 2005CHROMAT_FILE: MSMg01no425_d05.g1 PHD_FILE: MSMg01no425_d05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,496,462 - 29,496,956)(29,671,577 - 29,672,018)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TCGAGATTTCCGACTTTGATTTACACTCTTCCTGGTATCTATTGAAGTTT
TTATCAATAATACCTTTATCTTATATTCTGTTTCTCAGAATCAATGGATC
GTTTTTTCTTTGGGGTAAAAAAACATACTCATGACATCAATAATCTGTGT
TGGTACAGATTCTGATAATTAGATTAAACAAAGAATCAAGACTATTGAAC
ATTTTTTCTTTTAACTATTGCTAACAGGAATGTCACTCTTTGTCATCAGG
TTTTCTCTGTTAAGGATTGCCTAGAAGTTGGTAGGAAAAAATTGAAATGC
AATTGATGTGAACACAGCACAGGAAAGCAGAAGGTTTATCATCTCATCTA
CCTCTCCTTTTAAAGTTTATCTCATTGAGAAGCACCTACCGACCCTTATA
TGCAAAAATAACAACAAAAGCATTGTCTAAAAACACATATTGGAACAAAT
CCTTCCCTTATAGTTCTAACAAAACTAACATGCACTTCTAATAAGAATTA
ATTACTGGTTTGTTACCCCTTCAAATAAGCTTCTTCTCATAGNATCTTCC
TTTTTCTTTTTTTTTTCTTTTGTAACAATTTCTTCTTTATGCTTATTTCC
GCTGGCTGAAAGCCCACATTTGAATTCTCTCAGNTTATTGGAGCTTATTT
TAACTGAAATAATTATTATTTGTTCTGAAATGGCCACGCCAT
CATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTACATGGAGAGAGGAGGAGACTTCAA
CCCTGGTGAATAGAGGGCAAATAAATGCATCTAAAGAGATTCTTTTGGCT
GGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCA
GGCAGATTTTTGGGTTTGAGGTCAGCCTGGTCTACAAAGTGAGTTACAGG
ACAGCCAGGGCTATACAGAGAAACCCTGTTTCAAAAAACCAACCAACCAA
CCAATCAATCAATCAATAAAAATAAGAGATTCTTTTGATCAGCCAGGAGG
TGTCAGTTTCTTATAGTTAGTGTTGCTTCCTTGGGTTATGGTAAACACAT
GTTCATATTTACTAACCTTAAATTCTAAACACAACTAAATTACCAATAAT
ATGATAAGTAAGTACTCATTCGTGCCTATCACATTTGTTGTTTTGGAAAT
ATATTTGTAAATAAACTATACTTGTTAACAGTACAAACTTTTTTATTTAA
ATGTAATTGTGTTACTTCTTCCTCCCTCTGTCTGTCATACCACTCCCATG
TCTGAGTCCTTCCCTTCTAAATTACCANCTTTCTCCTCACTGGAATTACA
TATTTATATACCTGGGAGCCCAACTATATATACAACATGCTTGATATCTG
TTTATCGCTGCCTGCCTATATGTATTTTCTAAGATGACCACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_d05.b1 MSMg01no425_d05.b1 CHROMAT_FILE:
MSMg01no425_d05.b1 PHD_FILE: MSMg01no425_d05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:21 2005
         (495 letters)



>mm_chr10_29496262_29497156
          Length = 895

 Score =  934 bits (483), Expect = 0.0
 Identities = 492/495 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgatttacactcttcctggtatctattgaagtttttatcaataatacctttatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgatttacactcttcctggtatctattgaagtttttatcaataatacctttatctt 260

                                                                       
Query: 61  atattctgtttctcagaatcaatggatcgttttttctttggggtaaaaaaacatactcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atattctgtttctcagaatcaatggatcgttttttctttggggtaaaaaaacatactcat 320

                                                                       
Query: 121 gacatcaataatctgtgttggtacagattctgataattagattaaacaaagaatcaagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacatcaataatctgtgttggtacagattctgataattagattaaacaaagaatcaagac 380

                                                                       
Query: 181 tattgaacattttttcttttaactattgctaacaggaatgtcactctttgtcatcaggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattgaacattttttcttttaactattgctaacaggaatgtcactctttgtcatcaggtt 440

                                                                       
Query: 241 ttctctgttaaggattgcctagaagttggtaggaaaaaattgaaatgcaattgatgtgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctctgttaaggattgcctagaagttggtaggaaaaaattgaaatgcaattgatgtgaa 500

                                                                       
Query: 301 cacagcacaggaaagcagaaggtttatcatctcatctacctctccttttaaagtttatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacagcacaggaaagcagaaggtttatcatctcatctacctctccttttaaagtttatct 560

                                                                       
Query: 361 cattgagaagcacctaccgacccttatatgcaaaaataacaacaaaagcattgtctaaaa 420
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattgagaagcacctactggcccttatatgcaaaaataacaacaaaagcattgtctaaaa 620

                                                                       
Query: 421 acacatattggaacaaatccttcccttatagttctaacaaaactaacatgcacttctaat 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 acacatattggaacaaatccttcccttatagttctaacaaaactaacatgcacttccaat 680

                          
Query: 481 aagaattaattactg 495
           |||||||||||||||
Sbjct: 681 aagaattaattactg 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no425_d05.g1 MSMg01no425_d05.g1 CHROMAT_FILE:
MSMg01no425_d05.g1 PHD_FILE: MSMg01no425_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:21 2005
         (483 letters)



>mm_chr10_29671131_29672018
          Length = 888

 Score =  812 bits (420), Expect = 0.0
 Identities = 433/442 (97%), Gaps = 9/442 (2%)
 Strand = Plus / Minus

                                                                       
Query: 51  ataaatgcatctaaagagattcttttggctgggcagtggtggcacacgcctttaatccca 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 ataaatgcatctaaagagattcttttggctgggcagtggtggcacacgcctttaatccca 829

                                                                       
Query: 111 gcacttgggaggcagaggcaggcagatttttgggtttgaggtcagcctggtctacaaagt 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gcacttgggaggcagaggcaggcagatttttgggtttgaggtcagcctggtctacaaagt 769

                                                                       
Query: 171 gagttacaggacagccagggctatacagagaaaccctgtttcaaaaaaccaaccaaccaa 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gagttacaggacagccagggctatacagagaaaccctgtttcaaaaaaccaaccaaccaa 709

                                                                       
Query: 231 ccaa----tcaatcaatcaataaaaataagagattcttttgatcagccaggaggtgtcag 286
           ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ccaaccaatcaatcaatcaataaaaataagagattcttttgatcagccaggaggtgtcag 649

                                                                       
Query: 287 tttcttatagttagtgttgcttccttgggttatggtaaacacatgttcatatttactaac 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tttcttatagttagtgttgcttccttgggttatggtaaacacatgttcatatttactaac 589

                                                                       
Query: 347 cttaaattctaaacacaactaaattaccaataatatgata-----agtaagtactcattc 401
           ||||||||||||||||||||||||||||||||||||||||     |||||||||||||||
Sbjct: 588 cttaaattctaaacacaactaaattaccaataatatgatattataagtaagtactcattc 529

                                                                       
Query: 402 gtgcctatcacatttgttgttttggaaatatatttgtaaataaactatacttgttaacag 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gtgcctatcacatttgttgttttggaaatatatttgtaaataaactatacttgttaacag 469

                                 
Query: 462 tacaaacttttttatttaaatg 483
           ||||||||||||||||||||||
Sbjct: 468 tacaaacttttttatttaaatg 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 888
Length adjustment: 10
Effective length of query: 473
Effective length of database: 878
Effective search space:   415294
Effective search space used:   415294
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)