BAC Information

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BAC

Clone NameMSMg01-429J23
Chromosome10 (Build37)
Map Location 97,818,929 - 97,819,353
singlet/doubletsinglet
Overlap genenone
Upstream geneDcn, Lum, Kera, Epyc, 4921510H08Rik, EG667438
Downstream geneEG432494, Atp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429J23.T7 (MSMg01no429_j23.b1)MSMg01-429J23.TJ (MSMg01no429_j23.g1)
ACCAG522307AG522308
length869736
length of high quality
(start - end)
62 (61 - 122)431 (73 - 503)
definitionCHROMAT_FILE: MSMg01no429_j23.b1 PHD_FILE: MSMg01no429_j23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:10 2005CHROMAT_FILE: MSMg01no429_j23.g1 PHD_FILE: MSMg01no429_j23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCGCTAAACAACTCCTATATTCACACCACCCGCGNAANNCCNGGNTT
TCTCTGACCCAATTTTAATGGNNTTATTGGATTTTCTGNAGTCCATCTTC
TTGANNTCTTTATATATATCGAATATTANNCCCCTATCTGATTTANNATA
GGNAAAGATCCTTTTCCAATCTGNNTGNGNCCCCTTTTTGCCTTATTGAC
CGNGNCCTTTTGCTTTACCNAAACCTTTTGNAATNTTATGAAANNCCCTA
TTGGNCCAANNCCCGAANNAACCACTTGGCAACCGGCATCAGTCCTCCCA
ATCCGCGTTGGTTTCTTTCCACNAAAAACCCCCNNCCCCNNGGGGGNNNN
GNGCTTTTTCGTGTTCTACAACATTTTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGG
GGGGGTTNNNNNNNNNNNNNNNNNNNAGGGGGGGGGGCTGGGGGGGGGGG
GGGGAGGGGGGGATTTGTATCTGCTTTTTATTGTTTTTTTATTGNCTNNN
NNNNNNNNNNNNNNNCCNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNCNNNNCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNCNNCNNNCCCCCCCCCNCN
CACCAACACCTCTCTTTTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTGCAATATTTTGACTTGAATAATGAT
TTTTTATTATTATTTTTATTAAGTATTTTCTTCATTTACATTTCCAATGC
TATCCCAAAAGTCCCCCATAACCTCCCCCCGACTCCCCTACCCCCCCCCC
CACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAAGT
TTGCAAAACCTGATTTATAGCAATGAATAAGAGACAGTGTGACTAAAAAC
CATATGTCCATAATTTCTGGTGATATATCTAGTTATAGAAATTATAATGT
GATTTGAACTAAAGAAGAGAATTGTACTATGTATTCATTTGCAAAATAAT
AATTTTGTTCACGAGTACGATATTTCTAGGTGCTGTAACTCCACTTGATA
GCTGAGGAACGGAAGCATATATTTATTATTTTGTGACATTCATGAATGTG
CCTTTCTCGTGCTTCTCTGTTTTCCATAAATCATATTAGTATTTCTGTAT
TCCTCATCATGNGTATCTCCCGATAAAGAACATGGCAGCTACAAGAATGA
TACTTTAAACTGTTTTAACCTTTTGGTTCTGTACCCCCACTAGAAGGTAA
AAGCCCCCATACCTATGTACCCCCCCAAAGGTTACTTACCAACTCTCTTG
ATGGAAACTTTTGTCTGCCCACGAAAAACCACACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_j23.g1 MSMg01no429_j23.g1 CHROMAT_FILE:
MSMg01no429_j23.g1 PHD_FILE: MSMg01no429_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:10 2005
         (431 letters)



>mm_chr10_97818545_97819375
          Length = 831

 Score =  783 bits (405), Expect = 0.0
 Identities = 422/431 (97%), Gaps = 6/431 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgcaatattttgacttgaataatgattttttattattatttttattaagtattttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 attgcaatattttgacttgaataatgattttttattattatttttattaagtattttctt 750

                                                                       
Query: 61  catttacatttccaatgctatcccaaaagtcccccataacctccccccgactcccctacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 catttacatttccaatgctatcccaaaagtcccccataacctccccccgactcccctacc 690

                                                                       
Query: 121 cccccccccactcccacttcttggccctggcattcccctgtactgaggcatataaagttt 180
           ||||      ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 cccc------ctcccacttcttggccctggcattcccctgtactgaggcatataaagttt 636

                                                                       
Query: 181 gcaaaacctgatttatagcaatgaataagagacagtgtgactaaaaaccatatgtccata 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 635 gcaaaacctgatttatagcaatgaataagagacagggtgactaaaaaccatatgtccata 576

                                                                       
Query: 241 atttctggtgatatatctagttatagaaattataatgtgatttgaactaaagaagagaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 atttctggtgatatatctagttatagaaattataatgtgatttgaactaaagaagagaat 516

                                                                       
Query: 301 tgtactatgtattcatttgcaaaataataattttgttcacgagtacgatatttctaggtg 360
           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 515 tgtactatgtattaatttgcaaaataataattttgttcacaagtacgatatttctaggtg 456

                                                                       
Query: 361 ctgtaactccacttgatagctgaggaacggaagcatatatttattattttgtgacattca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctgtaactccacttgatagctgaggaacggaagcatatatttattattttgtgacattca 396

                      
Query: 421 tgaatgtgcct 431
           |||||||||||
Sbjct: 395 tgaatgtgcct 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)