BAC Information

Click to search

BAC

Clone NameMSMg01-433A11
Chromosome10 (Build37)
Map Location 71,132,038 - 71,132,300
singlet/doubletsinglet
Overlap genenone
Upstream geneBicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472, Zcd1, Ipmk, LOC100039860, LOC216081
Downstream geneEG216082, LOC622812, EG327767, 1700049L16Rik, LOC100040505, Zwint
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433A11.T7 (MSMg01no433_a11.b1)MSMg01-433A11.TJ (MSMg01no433_a11.g1)
ACCAG524906AG524907
length7361,178
length of high quality
(start - end)
497 (62 - 558)---
definitionCHROMAT_FILE: MSMg01no433_a11.b1 PHD_FILE: MSMg01no433_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:00 2005CHROMAT_FILE: MSMg01no433_a11.g1 PHD_FILE: MSMg01no433_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:00 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAATTCTCA
TATTCCCAATACAGCTTTCTCTCCCTCCATCTCATAAACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACATGGGTGCATACACACACGGGTGCACACACACACACACACACACA
CACACACACTAAACATACACACTTGTTTTTTGATATGATAGTGGGTTTAC
ATTGAAGGCTTTTGCAAGTGTCTCACCACTAAGCTATAACCCCAGACCTT
CTTCTTCTCTTCTCACTTTTATTAAGTTTGAGATAAAGTCTTAACTAAAT
TGCTGAGGGTGGCCATAAACTCACTATCATCATGTCTCAGATTTTGAGTA
TCTAGAATGACAACCTGTACCAGTAGGCTTCATTTGTATTTTAAACAAGC
ATTCTGTAAAGAAAAAAAATTCTTAGCATACAAGGTTAATTTTTTTTTTC
TCAAGAGGCAAACAGATGTGGGGCAGATAAATCAGTGTTCATTGGCATTC
ACCAAATGGTTCTCCTTGTTTTAAGCTGGATCTTACATTGCGGGGGTAAG
CCATCCTGGGACCAAAAGGCACAGAAAGCATGTTGCCTTCCAATAATTTA
AGAAAGCTCCGGGGCCTCTTATTAAAAACTGACCCTCCCACCAAAATAAC
AAAAGTGGGTCTTCAACCGTCGGAAACCAATTTATA
ATAGAACAGCACAATTCGATCGTTCCTCTCTTTCTCCTCTCTACGCGTAC
TCTATAAAGCNCTACTCCATATAATGTATATACGCGCGCATCTATGAATA
GTAACGCGTAAATTAGTGGTATTAGCCCAAGCGACTAGTAACATGNGAAC
GACGCAGCGTCCGTAAAGCGTTGCAGCGCGAACATATCACTGTGCAACAG
TTATATCTACCGACTTTTACTGCTTACCGCAGAGTGACCGCGGCTCTGGA
TTAATGATGGCTCCGGGGTCGGGCTGACAGCGTCATGAGAGATATTTAGA
GCTTCGGACAGGATACACGCGCCCGTTGCCAAATACCCGGTTCCGCTCGC
ACTTGCATCTTTTTTCCGGTTATCGTCACTTTCGTCCCACGACATCGTAA
CCGGTATGATACCGCAAATACTCATCTATCTAAAATATGTATATAATTAC
TATTATGTGATGACGAGAAATCAGACGCGTCGTACTTCCTCACATTCTTC
CACATCTTACCGTAACCTCCATTTTTCGTTACCGATATCTCGTATTTTCT
CACTATACCGCGCTATCATTGACATAATAGTCTATCCTAGTTCCCACTCC
CATTCTTGAATTAGTTTCACGATATGGATATACTAGTAGCTCTTACATTC
AGAGTGTTCGTATCGCCGCGCCGTGGTTTGGTCAGACATTACCGATCCAT
TGCTACGTATCAGTTGNTCGACGTTGTGTGGTTAGACGTATAGTTTATAC
AGCACCTCGTNTTCACCAATGTGCCCGTCGCCGTCGGATTATATTGCGCC
CTTCTAANCACTTCTGTCGCAATATATATCTCAGACGTATCTCACTATGT
ACGGCCGTATCTATCCGTCACTTTTCTTCGTCTTCTGTCGTCTAGCATAC
GTTATACCTCGATATAGGGCTATCACCTGTCCACCTATATATAAGATAAT
TATACCACTATCGATCTCGCTGACACTGTACTCCTATAATCCAATTCCTA
CTTTCATCTATCTGTCCATTGCATTTTCACTATTTNGCTCACATCTTACG
TCTCGGGTGCATTTATTCACTCTTAATCGCGTATTAGGTAAGATGTGATG
ATCCCACTTATTTGTATTCGCTGCCGTATTGTCCACTATTATTTGGCCCT
GCTTTATATCCTCCGTCATAAATATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_a11.b1 MSMg01no433_a11.b1 CHROMAT_FILE:
MSMg01no433_a11.b1 PHD_FILE: MSMg01no433_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:00 2005
         (497 letters)



>mm_chr10_71131721_71132615
          Length = 895

 Score =  447 bits (231), Expect = e-129
 Identities = 257/267 (96%), Gaps = 6/267 (2%)
 Strand = Plus / Plus

                                                                       
Query: 118 cacacacacacacacacacacacacacacactaaacatacacacttgttttttgatatga 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cacacacacacacacacacacacacacacactaaacatacacacttgttttttgatatga 377

                                                                       
Query: 178 tagtgggtttacattgaaggcttttgcaagtgtctcaccactaagctataaccccagacc 237
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 378 tagtgggtttacattgaaggcttttgcaagtgtctcaccactaaactataaccccagacc 437

                                                                       
Query: 238 ttcttctt--ctcttctcacttttattaagtttgagataaagtcttaactaaattgctga 295
           ||||||||  |||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttcttcttacctc--c-cacttttattaagtttgagataaagtcttaactaaattgctga 494

                                                                       
Query: 296 gggtggccataaactcactatcatcatgtctcagattttgagtatctagaatgacaacct 355
           |||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 495 gggtggccataaacccactatcatcat-tctcagattttgagtatctagagtgacaacct 553

                                      
Query: 356 gtaccagtaggcttcatttgtatttta 382
           |||||| ||||||||||||||||||||
Sbjct: 554 gtaccactaggcttcatttgtatttta 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 97
Number of extensions: 44
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 895
Length adjustment: 10
Effective length of query: 487
Effective length of database: 885
Effective search space:   430995
Effective search space used:   430995
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)