BAC Information

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BAC

Clone NameMSMg01-433D18
Chromosome10 (Build37)
Map Location 35,509,002 - 35,668,835
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667824, LOC100041585
Downstream geneLOC667860, Hs3st5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433D18.T7 (MSMg01no433_d18.b1)MSMg01-433D18.TJ (MSMg01no433_d18.g1)
ACCAG525064AG525065
length772754
length of high quality
(start - end)		464 (38 - 501)418 (69 - 486)
definitionCHROMAT_FILE: MSMg01no433_d18.b1 PHD_FILE: MSMg01no433_d18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:16 2005CHROMAT_FILE: MSMg01no433_d18.g1 PHD_FILE: MSMg01no433_d18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,668,376 - 35,668,835)(35,509,002 - 35,509,419)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAA
CTATTGCCATTAAAAGTATGTGCTAAGGGCATGTCTGCATTCTAGTTGGA
TCACAAAGACCTAGGAGGGCTTTGAATGTGATCAGATCAGCCATGTAAAT
GGATTAAAATTCCCTTTCAATTATTGTTTGATTTCAGAGATACAAATATT
TTAAAGAATGAATTTTAAATAGCACAACAAAGGATGCCTGTAATGTAGAA
TTTACTTGTATTGATATATGTTTGGTGATTACCTCCACCTATTCAATGAA
ACAAATGTTGTTTTATCTTCTTAAAGAGAAAAATGATGTCATCAGGAAAT
GAGTAAAGCTCATGTCATTCTTATTTTTGTGAATCCATGCTAAGGTCAAA
TTACAAAAGTCTGCTATTGAGTTAAAATTCTACCAAAGCCTTTTAAGGAG
AAAATGTTTTGTGAGCATTTTGCTTTTTAGTCCTTANCCAGTGACTCTGC
TAGAAACCCCAGAATATACAGACCCTCCGACACACCGACCCTTACCACTA
ACATACTACAACACACCCTCTCACACACATGACGAACCCTATTAGTCTTT
CCCCCTTGCCCCACTTGAACACCCCCGGTTGGCCTGAAACACCCTTGCTC
TTTTCCCTTAATAAAAACAATAAACCCCCCGCCCCTTTTAAACTTTGTGT
TTATTTAATTTCGAACCCAAAGCGACACCCACTCTGTTTTTCTTTGTACC
TCCCCTGTTCTTCTTCCCTATT

AGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTATTATTATTGTCTAATCCATACATTAGAG
ATTCTAGGTAAAGCTCTGACTCATTGGAACCAAAATACTAATTATTATCA
CTGGTATCATCCCTTTACTTAACAACAGACTACCGCAGAATCTGTAGAGC
CATTAGCTGTATGTGGATAGGGAAAACTTCTTGCTGTCCCTGTGGGGGCA
TGATTCCTTACTCACAATCTGAAAAGCACCTCCTTCAAGTAACTTAATAT
ATTTTAGAAAATGTCTTCCAAAACTTAAAATTATACCTTTAAGGGACAAC
CATAAATGAACACAGAAAAGATTCTTTTCTCTTTCAGTCAATTTATCTAG
AGATATTAACATTTTATAGCACTTTTACCAGACATAGATTTCATGTAGAG
ATGAACATGGAGATGATTAGTTTGGTATTGCATAGTAATTTTGCAATAGT
TAAGTACATTATGAAGATATAAAGCATATTAATTGCAGTTTCCATCCCCT
AAAAGTAAAAATGGTCTATTTTTTTCACTTTTTTTTTTTCTCCCGTTTTT
CAAAAATCTTTTCCTAACACTTTTCCTCAAAAAAAGTTTCAATCAAATGG
GTGGCCCAACTTTTTGGGCTGGGCTTCCTTCTTTTCCCTTCCGTTCCCTC
GTCCCTCTCCGCCTTTTTTTCTTGCGTGTCTTCTCCCCCTTTCTTTTCCC
GTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_d18.b1 MSMg01no433_d18.b1 CHROMAT_FILE:
MSMg01no433_d18.b1 PHD_FILE: MSMg01no433_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:16 2005
         (464 letters)



>mm_chr10_35668050_35668913
          Length = 864

 Score =  791 bits (409), Expect = 0.0
 Identities = 447/460 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaactattgccattaaaagtatgtgctaagggcatgtctgcattctagttggat 64
           ||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 786 gaattccaactatagcgattaaaagtatgtgctaagggcatgtctgcgttctagttggat 727

                                                                       
Query: 65  cacaaagacctaggagggctttgaatgtgatcagatcagccatgtaaatggattaaaatt 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct: 726 cacaaagacctaggagggctttgaatgtgatcagatcagccatgtaaatgaattaaaatc 667

                                                                       
Query: 125 ccctttcaattattgtttgatttcagagatacaaatattttaaagaatgaattttaaata 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 666 ccctttcaattattgtttgatttcagagatacaaatatttcaaagaatgaattttaaata 607

                                                                       
Query: 185 gcacaacaaaggatgcctgtaatgtagaatttacttgtattgatatatgtttggtgatta 244
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gcacaacaaagtatgcctataatgtagaatttacttgtattgatatatgtttggtgatta 547

                                                                       
Query: 245 cctccacctattcaatgaaacaaatgttgttttatcttcttaaagagaaaaatgatgtca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cctccacctattcaatgaaacaaatgttgttttatcttcttaaagagaaaaatgatgtca 487

                                                                       
Query: 305 tcaggaaatgagtaaagctcatgtcattcttatttttgtgaatccatgctaaggtcaaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tcaggaaatgagtaaagctcatgtcattcttatttttgtgaatccatgctaaggtcaaat 427

                                                                       
Query: 365 tacaaaagtctgctattgagttaaaattctaccaaagccttttaaggagaaaatgttttg 424
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaaaactttgctattgagttaaaattctaccaaagccttttaaggagaaaatgttttg 367

                                                   
Query: 425 tgagcattttgctttttagtccttanccagtgactctgct 464
           |||| | |||||||||||||||||| ||||||||||||||
Sbjct: 366 tgagaactttgctttttagtccttaaccagtgactctgct 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no433_d18.g1 MSMg01no433_d18.g1 CHROMAT_FILE:
MSMg01no433_d18.g1 PHD_FILE: MSMg01no433_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:16 2005
         (418 letters)



>mm_chr10_35508802_35509619
          Length = 818

 Score =  793 bits (410), Expect = 0.0
 Identities = 416/418 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actattattattgtctaatccatacattagagattctaggtaaagctctgactcattgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actattattattgtctaatccatacattagagattctaggtaaagctctgactcattgga 260

                                                                       
Query: 61  accaaaatactaattattatcactggtatcatccctttacttaacaacagactaccgcag 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 accaaaatactaattattatcactggtatcatccctctacttaacaacagactaccgcag 320

                                                                       
Query: 121 aatctgtagagccattagctgtatgtggatagggaaaacttcttgctgtccctgtggggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatctgtagagccattagctgtatgtggatagggaaaacttcttgctgtccctgtggggg 380

                                                                       
Query: 181 catgattccttactcacaatctgaaaagcacctccttcaagtaacttaatatattttaga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 catgattccttactcacaatctgaaaagcacctccttcaagtaacttaatatatttaaga 440

                                                                       
Query: 241 aaatgtcttccaaaacttaaaattatacctttaagggacaaccataaatgaacacagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatgtcttccaaaacttaaaattatacctttaagggacaaccataaatgaacacagaaa 500

                                                                       
Query: 301 agattcttttctctttcagtcaatttatctagagatattaacattttatagcacttttac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agattcttttctctttcagtcaatttatctagagatattaacattttatagcacttttac 560

                                                                     
Query: 361 cagacatagatttcatgtagagatgaacatggagatgattagtttggtattgcatagt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagacatagatttcatgtagagatgaacatggagatgattagtttggtattgcatagt 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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