BAC Information

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BAC

Clone NameMSMg01-433K23
Chromosome10 (Build37)
Map Location 53,984,726 - 53,984,885
singlet/doubletsinglet
Overlap genenone
Upstream genePln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
Downstream geneLOC100041898, LOC382460
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433K23.T7 (MSMg01no433_k23.b1)MSMg01-433K23.TJ (MSMg01no433_k23.g1)
ACCAG525410AG525411
length803872
length of high quality
(start - end)
169 (68 - 236)42 (76 - 117)
definitionCHROMAT_FILE: MSMg01no433_k23.b1 PHD_FILE: MSMg01no433_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:51 2005CHROMAT_FILE: MSMg01no433_k23.g1 PHD_FILE: MSMg01no433_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCAAATTCTACTGATGATGGTGATGATGATGATGATGATGTTATG
CTTGTGATGGATTTGAAACTTCTCACAGCTGAAGAAAGCCAATATTTTAA
TAGAAACTGATAATCTGTCCAACTTTTGCCATGTAGGAGACAGGTATTAT
CTTCATTCTTTGTTGGGGTTGATATGGTGTGGCTGCTTTCCTATTATTTT
TTTACTCTCCGACTTGGCTGTCTCATGATTATTTATTCCTCACCTATCTC
GAGATTTTACATCTTTTTTTTTTCGACCCACTGCGCTTACAGTCCTGTGT
ATTTTTTTTCCCCCCCCCCCTTTTTTATTGCCGTGTCCCTCCATTCTGAT
ATGCCTTTTTCTTCGTCCCCCCCCCACCCCCCCACCCTTTTCTTACAATA
TATTCATTTTTATCGCTTTTTTCCCTCCCCCCCCCTCCGCATACCCTCTT
CTCTTTTTTTCTCTCCTCCCTCCCTTCTTTCTCCTTTTCTCCGCCCTTCC
TCTTTCCTTTCCCTTTACCCTTTTCCTCCCCTTCTCAATTCTTCCTTTTT
TTTTTTCTTCCCATATTCACCCCCTTTTTTTTCACCTTCCCCGCCTTCCC
TTCTTACCCCCTGCTTACCCCTTAATCCCCCATTCCTCCTCCACATTTTT
CCCCCCTCACCTCAATATTTCCTCTCTCCTTTATTTTCCACCGCCACTTT
TTACTTCCTCTTCATGCACTACCGTTCACGCTCCCCCTTATCTTACTTTT
CTT
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGGGGCTAATGATTTTGTTGTTG
TTGTTGTTGTTGTTCGTTGCCGCCANACCCNCCCCCCCCCCCGTCTCNCC
TTCCTTCTCCCTCTTTTTCCTGCCCTCCTCTCCCTTCTCCCTCTCCTTTC
CCTTTTCCCTCTTCTCCCTCCTTTCCGTTCCTCTCTCCTTTTTTCCTTTC
CCTTCTCCCCCCTCTCCCCCTTCTCCCTCTCCTTCTCTCTTNTTTTCTTC
TTTCTTTCTCCACCCTTCCCTCTTTTTTTTTTTCTCCCTCTCCCTCCCCC
TTTTCTTCCCTTCCCCTTTTCTCCTCCCCCCTCCTTCCCCCTTCCTCCCT
CTCCCTCCCCTTCCTCTTCCTTCCTCTTTCCTTCTCTTTCCTCCCTCTCC
CCTCCTTCCCCCCCCCCTTTTTTCCCCTTCCTTCCTTCCTCTTTCTCTCT
TCCCTTCTTTCCTCCTTTCCTTTTCCCCCTCTTTTNCCCTCCCCCTCCCC
TCTTTTTTTCCCCTCCTTTCCTTCTTCCCTCTTCCTCCCCTTCTCCCTTT
TCCCCCTTCTTCCCCCTTTCTCTTCTTCCCCTCTCCTTCCTTTCCTCGTC
TCTCCCCCCCTCCCCCCTTCTTTTTTTGTTTTCCCCCCCCCTTCTTTCCC
CCCCTCCTGTACCCTTCCATCTTCTCCTTCCCCCTTCCCACACCTATTTC
CTCCCTCTTACTCTCCCCCTCTTTTACCCTCTTATCCCCGTCTCGTTCTT
CTCTGTCTCCTCTTTATTTCCTCCTTCCCTCTCCCTCCTTTTATCCCACT
CTTTTTCCCCTTCTCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_k23.b1 MSMg01no433_k23.b1 CHROMAT_FILE:
MSMg01no433_k23.b1 PHD_FILE: MSMg01no433_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:51 2005
         (169 letters)



>mm_chr10_53984518_53985086
          Length = 569

 Score =  279 bits (144), Expect = 9e-80
 Identities = 156/160 (97%)
 Strand = Plus / Plus

                                                                       
Query: 9   tgatgatgatgatgatgatgttatgcttgtgatggatttgaaacttctcacagctgaaga 68
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 209 tgatggtgatgatgatgatgttatgcttgtgatggatttgaaacttctcacagctaaaga 268

                                                                       
Query: 69  aagccaatattttaatagaaactgataatctgtccaacttttgccatgtaggagacaggt 128
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 269 aagccaatattttaatagaaactgataatctgtccaacttttgccatgcaggagacaggt 328

                                                   
Query: 129 attatcttcattctttgttggggttgatatggtgtggctg 168
           ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 329 attatctacattctttgttggggttgatatggtgtggctg 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)