XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCATA
TTCACATGAAAAAGAAAAATAGGCTAGCTAAAGCAGTTCTGTAAAATTAA
AAAAAAAAATTCTGGAGATATCACCATGGTCTCAGGTATCACATCAGGCT
TTCTTTTCAACCCTCAAATTTCAGTTATGACTCTCTTAATTGAGCCCACA
TCATTCTACTTCTATTTCCCAACTACTTACTTGCTCCTCATAATGCTCCC
CAGAGCCTCTGAGTGTTGGAGGTTATCTTAGAAGTGGTCTCAGGCATGGT
ATGCCTGCTCATTCATTATGGCATCAGACTGGTGGTCATCTGAGACTAGC
TCCATTTCTGGGTCCCATAACACCCATCTGATGGTCATTGTGAGCACACT
TCTCACCTGGGCCACCATAGTGACCCCTTGTACAGGTTGTGTGTCTCAGG
CTCACTCCTGCCCAGGGTGTACTGTCCCAGGTCAGGTTCTTCTCGTCTCT
GGATTGCTCCTTGTCCAGGCCTTCTTCATGCTAAATTGTAGTAGTTTCAT
GCTGGCTGCCTGTCCAGGCACACAGTAGCTGGTTTGGTGCTCCCTTCAAG
CTGGCTTTTTTTTTTTTTCCTTATCTTCAGGAACTAATTGTTCGGATATT
TCTAGTTTGGAAAATTGAGCAAAAAATTAACCTCTCTCCTTTTCTGCCCC
CTATGGTGGGCCAGGGGACACAAATTTTTTCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACGCAGTTGAATCCTTCTCAACAGTCTGTGTTACGG
GAACACTTCATTACCACCGTTCCCCAGCTGAAGAGTTCTGAATTCACGCA
GTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTTCATTACCATGA
CCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCTTGCGCCGGTGGTGGT
AACCGTCCCAGGTTTTCTCGTCCCGGGATTTCTCGTCCCAGGTCTTCTCG
TCCCGTCCCGGGTTTCAGCACCAACTCTTACACGCGTTCTCGCGACCGGC
CAGGAAAGACGCAACAAACCGGAATCTTCTGCGGCAAAGCTTTATTGCTT
ACATCTTCAGGAGCCAGAGAGCAAGAAAGCAAGAAAAAGAACAAGAACAA
GAAAGCAAGAGAAAGAAAAAGAACAAGAACAAGAAAGCAAGAGAAAGAAC
AAGAGCAAGAAAGAGAATAAGAGAAAGAACAAGAAAGCAAGAGAAAGAAT
GGCAAAACCCCGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTAT
TACTCCCTGATTGGCTGCAGCCCATCGGCCCAGTTTGTCTCCCGAGAAAG
CCGAACACCTGTCGGGAAAACTGCCCCCGCACGTGTGCAGATAATGTTTA
CAATCTAGAACCAAGTGGCCCTGTCACCTTGAATG

Query= MSMg01no433_m17.b1 MSMg01no433_m17.b1 CHROMAT_FILE:
MSMg01no433_m17.b1 PHD_FILE: MSMg01no433_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:59 2005
         (481 letters)



>mm_chr10_46377541_46378421
          Length = 881

 Score =  890 bits (460), Expect = 0.0
 Identities = 477/484 (98%), Gaps = 6/484 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaaaaagaaaaa--taggctagctaaagcagttctgtaa-aattaaaaaaaaaaattct 57
           |||||||||||||  |||||||||||||||||||||| || |||||||||||||  ||||
Sbjct: 201 tgaaaaagaaaaaaataggctagctaaagcagttctg-aacaattaaaaaaaaa--ttct 257

                                                                       
Query: 58  ggagatatcaccatggtctcaggtatcacatcaggctttcttttcaaccctcaaatttca 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggagatatcaccatggtctcaggtatcacatcaggctttcttttcaaccctcaaatttca 317

                                                                       
Query: 118 gttatgactctcttaattgagcccacatcattctacttctatttcccaactacttacttg 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gttatgactctcttaattgagcccacatcattctacttctatttcccaactacttacttg 377

                                                                       
Query: 178 ctcctcataatgctccccagagcctctgagtgttggaggttatcttagaagtggtctcag 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ctcctcataatgctccccagagcctctgagtgttggaggttatcttagaagtggtctcag 437

                                                                       
Query: 238 gcatggtatgcctgctcattcattatggcatcagactggtggtcatctgagactagctcc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gcatggtatgcctgctcattcattatggcatcagactggtggtcatctgagactagctcc 497

                                                                       
Query: 298 atttctgggtcccataacacccatctgatggtcattgtgagcacacttctcacctgggcc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atttctgggtcccataacacccatctgatggtcattgtgagcacacttctcacctgggcc 557

                                                                       
Query: 358 accatagtgaccccttgtacaggttgtgtgtctcaggctcactcctgcccagggtgtact 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 accatagtgaccccttgtacaggttgtgtgtctcaggctcactcctgcccagggtgtact 617

                                                                       
Query: 418 gtcccaggtcaggttcttctcgtctctggattgctccttgtccaggccttcttcatgcta 477
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gtcccaggtcaggttcttctcatctctggattgctccttgtccaggccttcttcatgcta 677

               
Query: 478 aatt 481
           ||||
Sbjct: 678 aatt 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)