Query= MSMg01no434_e04.b1 MSMg01no434_e04.b1 CHROMAT_FILE:
MSMg01no434_e04.b1 PHD_FILE: MSMg01no434_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:37 2005
(267 letters)
>mm_chr10_56196052_56196717
Length = 666
Score = 424 bits (219), Expect = e-123
Identities = 257/281 (91%), Gaps = 19/281 (6%)
Strand = Plus / Minus
Query: 5 gaattccactttacttcaaaacttacaaagcagttatatcagctgaatctatgaaagatt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gaattccactttacttaaaaacttacaaagcagttatatcagctgaatctatgaaagatt 351
Query: 65 gcctgcattagttcttgaaataccaacttttcaaaaatgttgaaattgtaatttcaattt 124
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct: 350 gcgtgcattagttcttgaaataccaacttttcgaaaatgttgaaattgtaatttcga-tt 292
Query: 125 atgagatggagatgtactgactaacatattcaatgtcctcaacacatatatagtgttttt 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 atgagatggagatgtcctgactaacatattcaatgtcctcaacacatatatagtgttttt 232
Query: 185 gcggccataccactctgctcaaaaata------------------tgtgtgtgtgtgtgt 226
||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 231 gcggccataccactctgctcaaaaatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 172
Query: 227 gtgtgtgtgtgtgagagagagagagagagagagagagagag 267
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gtgtgtgtgtgtgagagagagagagagagagagagagagag 131
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 14
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 666
Length adjustment: 9
Effective length of query: 258
Effective length of database: 657
Effective search space: 169506
Effective search space used: 169506
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no434_e04.g1 MSMg01no434_e04.g1 CHROMAT_FILE:
MSMg01no434_e04.g1 PHD_FILE: MSMg01no434_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:37 2005
(525 letters)
>mm_chr10_56036196_56037120
Length = 925
Score = 1007 bits (521), Expect = 0.0
Identities = 524/525 (99%)
Strand = Plus / Plus
Query: 1 cttgagaagatatggacacaggattcttcctctcttgcagctccctgagctcttgcgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgagaagatatggacacaggattcttcctctcttgcagctccctgagctcttgcgtgg 260
Query: 61 gaaaaatgaattctcctactttacccaagcagacttgctcctccaaagtcacagatatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaaatgaattctcctactttacccaagcagacttgctcctccaaagtcacagatatgg 320
Query: 121 ctgcagaaagaaagagcatcgggtggtcttgtaagcgcctatcaaactctcacatgatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcagaaagaaagagcatcgggtggtcttgtaagcgcctatcaaactctcacatgatca 380
Query: 181 ttatcagtgtaacctcagggatgtgcacccatctatatgtggtctacagtcctgatgcat 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatcagtgtaacctcagggatgtgcacccatctatatgtggtctacagtcctgatgcat 440
Query: 241 ctctgtggcagcacttttcccaccccctccctttcttcaggcctctcttatcaaaactga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctgtggcagcacttttcccaccccctccctttcttcaggcctctcttatcaaaactga 500
Query: 301 cttttctaaggcttaaggtgaaggttgttagagtacacatttgaggaattgtattcagta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttttctaaggcttaaggtgaaggttgttagagtacacatttgaggaattgtattcagta 560
Query: 361 ccaacctactctcttcccatccttatcctaaagtcttaaaattgcttcacatctggtcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaacctactctcttcccatccttatcctaaagtcttaaaattgcttcacatctggtcaa 620
Query: 421 gatttttaaaagttatttcattattttatgatatgtgtattttggtagagttacagatag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatttttaaaagttatttcattattttatgatatgtgtattttggtagagttacagatag 680
Query: 481 ctgtgagttgccatatgggttctgggaatcaaacctgaccctgtg 525
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgtgagttgccatatgggttctgggaatcaaacctgaccctgtg 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
