BAC Information

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BAC

Clone NameMSMg01-435I18
Chromosome10 (Build37)
Map Location 40,439,918 - 40,440,163
singlet/doubletsinglet
Overlap gene9030224M15Rik
Upstream geneE130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo
Downstream geneCdc40, Wasf1, Gpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435I18.T7 (MSMg01no435_i18.b1)MSMg01-435I18.TJ (MSMg01no435_i18.g1)
ACCAG526826AG526827
length826860
length of high quality
(start - end)
247 (66 - 312)173 (73 - 245)
definitionCHROMAT_FILE: MSMg01no435_i18.b1 PHD_FILE: MSMg01no435_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:20 2005CHROMAT_FILE: MSMg01no435_i18.g1 PHD_FILE: MSMg01no435_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXCTGCTAGACGATCCGCGGAATTC
TAGGATTTTCCCATCATTCACATCAACATCAATCTGCTGTGTCCATGTCT
CAGTCAAAAACACCCATCAGCATCCCCCAACAGCCACCTTCCCTGAAAAC
ATTATCCTCTTAGGATGGAGGTCTGCATATAAGAAAACAACGTCCAAATG
AGTGGGCAAGAGGGCAGGGCAGGAAAGCCACTGTATGGCGTAAGCATGAA
GAAGAAAACTGGAAGGGTTATGAGCAGAGAACGAAGTGCGGCTTCCTCTC
AGTACCTGCAATCTTTGTTGGTTCATGAGGACCCACAGTGTTTCACAAGG
TCTTCTCATGGTCTCTTTGCTGGCTCTCAACTATTTAAGTCCTCATACCT
TATCCATACCGCCAGACATGTTTGCTGCCTTGTATTTTTTACTAGTATCC
TGTTCTACTTCACTCCTTACTTTTGTTTACCTCTTTCCCAATTTTTCTTT
CTTATGCCTACACCTCTTCTTCTCTTTTTTTTCTCTACTTTCCTCCTTTC
TCTCCCCTTCCCCCTCCCCCCTTCTCTTCCCACCCGCTCTTTTTTTTCCC
CTTTTATTCCTTTTCCTCCCCCATCCTCTTTTTCCCTTCTCTCTTTTTCC
TTTATCTCCTTTCTCCCCTTTCCTCTCCTTCTTCTTTTTTTTCTCCTCTC
TTTCTTCCTCTCCTTCCTACCATCATATTATTCTTTCTTATTTCGCCTTC
CTTTTCCCACCTTCCATACCCCTCCTCTTATTTATTACACCTGTTTCTCT
CATTTTATCCTTTCTTTTCTCCTTTC
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTTTTTA
ATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATAT
ATTGGATATTAGTCCCCTATCCGATTTGGGATAGGTAAAGATCTAAAGGT
GCATTTCAAATAAGAGGAGAGAAGTAGATTACTCACTTAGTGGTTTGGGG
GCAATATGAGTGAGTTTCCAGGTTCAAAGTTGGATGTGTTCTTCTTATCT
TGCATCACAATACTTTTTTTATGAACCTGTGAGACTCAAAGATCTGAGGC
CTTTTTTTTTATTTTTGTGCACAACTCCATTTTATTTTTCTTCACCCTCG
ATGTTTTTATTTCTTCCTTTCTTTTTCCTCCCCCCTCCCTCTACATGTAT
TTTTCCATTATTTTTTTAATTTTTCCCCTTATTCTTCTTATTTTAATTCG
GATTCTTTCTTTATCTACCTCTTTTTATCCTCCCCATTTTTTTTTTTCTT
TTCGCCCATTTTTCGTGTATCGTCCTTTTTCACTTCTCCTCTTCTCGCCT
TTTTTATATATTTTGCTCTATTCTTTCTCCCTCATCCTTTCTTATCTTAC
ATCCCCCTCCATTTCTTTCCCCCCTCCCTTCATTCTCCCACCCCCTCTCC
TTCTTTTTTATCTCCCTCTCAACCACTTTACTTCTCCCCCCTCCTTCTCC
ACCCTCACTCCCACCGCCCTGCTATTTATATCTTATTATTTTCCACTTTT
TTCCTATTTTTTCACATTTCTTATTCCTCTTTTTTTCCCTCTTGCTCTCT
TCTCTATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_i18.b1 MSMg01no435_i18.b1 CHROMAT_FILE:
MSMg01no435_i18.b1 PHD_FILE: MSMg01no435_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:20 2005
         (247 letters)



>mm_chr10_40439718_40440364
          Length = 647

 Score =  422 bits (218), Expect = e-122
 Identities = 239/246 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcacatcaacatcaatctgctgtgtccatgtctcagtcaaaaacacccatcagcatcc 60
           |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 446 attcacatcaacatcaatctgctgtgtccacgtctcagtcaaaaaaacccatcagcatcc 387

                                                                       
Query: 61  cccaacagccaccttccctgaaaacattatcctcttaggatggaggtctgcatataagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cccaacagccaccttccctgaaaacattatcctcttaggatggaggtctgcatataagaa 327

                                                                       
Query: 121 aacaacgtccaaatgagtgggcaagagggcagggcaggaaagccactgtatggcgtaagc 180
           ||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct: 326 aacaacgtccaaatgagtgggcaagagggaagggcaggaaagtcactgtatggggtaagc 267

                                                                       
Query: 181 atgaagaagaaaactggaagggttatgagcagagaacgaagtgcggcttcctctcagtac 240
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 266 atgaagaagaaaactggaagggttataagcagagaacgaagtggggcttcctctcagtac 207

                 
Query: 241 ctgcaa 246
           ||||||
Sbjct: 206 ctgcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)