BAC Information

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BAC

Clone NameMSMg01-436B01
Chromosome10 (Build37)
Map Location 104,680,552 - 104,680,913
singlet/doubletsinglet
Overlap geneTmtc2
Upstream geneLOC100042383
Downstream geneEG627573, BC067068, Ccdc59, EG667758, EG639162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436B01.T7 (MSMg01no436_b01.b1)MSMg01-436B01.TJ (MSMg01no436_b01.g1)
ACCAG527221AG527222
length732772
length of high quality
(start - end)		580 (54 - 633)49 (73 - 121)
definitionCHROMAT_FILE: MSMg01no436_b01.b1 PHD_FILE: MSMg01no436_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:02 2005CHROMAT_FILE: MSMg01no436_b01.g1 PHD_FILE: MSMg01no436_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAATGTATTACCAAGTACAATTATGTTTTCTTTATGGG
AACTTACTGTTTAGTCGATGTAATTGTAAATTTTTTAAGTTAATGTAATT
TCTCTTCACTATGCTTCAGTTTTTGTTTGTTTGGCTTTTGTTTGCTTGTT
TTTTCGAGACAGGGTTTCTTATTGTAACCTTAGCTGCCCTGGAAACTCTC
TCTACAGACCAGGCTGTCCTCAAATTCAGCAATCCTTCTGCTTTTGCCTC
ATGAGTGCTGAGGTTAAAGGTGTGTACCACCACCACTACTTGGCTCCAAT
ACTTCAGTTTTAAAATACATGGCATAATTTTATTTTATTTTATTTTATTT
TATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTT
TATTTTATTTTATTTTATTTTGACAGACAAGCAAGCCTCAATGAAGCCGC
TGAGAAGTATTACGATCTGGCAGCAAGACTGAGACCTAATGTAAGTACTT
CCCCAATGAGCACCATTAGTGAAGGCATGCTCCCAGGGCATGCAGTATAT
TCATTAAAACTGTCTTGTTTCCTCTTTTCCTCCCCTGGTTCTCTGTTTGA
ACACCCTCTGTATAGTACATAACCACCCATTCCAGTTTCTTTCGTCTTTC
CCAGAAATTCTCTTTTTCCCCATGAAAACACN

NCATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCAGAAATTCCTCATACTCAGTGTCACATATGTGCC
TACACACACACAGTGTGTGTGTGTGTGAATATGTGTATAATAATATGTAC
ATAAAAACAACAAATCACAAAAAAAACCAACACAAAACACCAACACAAAC
AAAACAAAATAAACACAAAAAAAACAAAATAAAAATCACAAACACTAAAC
AAAACAAAAAAAAAACACAAAACACAACAACACAAAAAAAACACCCCCNA
CACCCCACCCCACCACCATTTAATAAACCCCCCACCAACCACACCACAAA
AAAAACAAAAAAAACAAAACACCCCCCCAACCCTCCCACCACTCAACAAA
AAAACACCACAACAAAAACACAAAAAAACAAACCAACAAAACAAACCAAA
TACAACCCAAACACAAAACAACAACCAACAACAACACACCCCCACAAACC
AAAAAAAAAAACTCACAAACACAAACAAAAATCACCAAACACCAACCAAA
CTAAAACCCCAACAAAAACACCCACACAAAAAAACCACAACCAAAACACA
AAAACCACACCCCCCACCCCACTACCCCCCAAACAAACACAAAAAAACAA
AAAAAACAAAAAACAACCAACACAAACCAAAACACCCACAAACAAAAAAA
ATACACCAAAAAAAAAAAACCCACCATAACTCCACACCTAACCCCATCTC
CCAACCAACCAAAAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_b01.b1 MSMg01no436_b01.b1 CHROMAT_FILE:
MSMg01no436_b01.b1 PHD_FILE: MSMg01no436_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:02 2005
         (580 letters)



>mm_chr10_104679934_104680913
          Length = 980

 Score =  553 bits (286), Expect = e-161
 Identities = 356/412 (86%), Gaps = 50/412 (12%)
 Strand = Plus / Minus

                                                                       
Query: 169 ttgtaaccttagctgccctggaaactctctctacagaccaggctgtcctcaaattcagca 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 ttgtaaccttagctgccctggaaactctctctacagaccaggctgtcctcaaattcagca 921

                                                                       
Query: 229 atccttctgcttttgcctcatgagtgctgaggttaaaggtgtgtaccaccaccactactt 288
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||
Sbjct: 920 atccttctgcttttgcctcatgagtgctggggttaaaggtgtgcaccaccaccgctactt 861

                                                                       
Query: 289 ggctccaatacttcagttttaaaatacatggcataattttattttattttattttatttt 348
           |||||||||||||||||||||||||||||||||||                         
Sbjct: 860 ggctccaatacttcagttttaaaatacatggcata------------------------- 826

                                                                       
Query: 349 attttattttattttattttattttattttattttattttattttattttattttatttt 408
                                    ||||| |||| ||||||||||||||||||||||||
Sbjct: 825 -------------------------attttgttttgttttattttattttattttatttt 791

                                                                       
Query: 409 attttattttgacagacaagcaagcctcaatgaagccgctgagaagtattacgatctggc 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 attttattttgacagacaagcaagcctcaatgaagccgctgagaagtattacgatctggc 731

                                                                       
Query: 469 agcaagactgagacctaatgtaagtacttccccaatgagcaccattagtgaaggcatgct 528
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 730 agcaagactgagacctaatgtaagtacttccccaatgagcgccattagtgaaggcatgct 671

                                                               
Query: 529 cccagggcatgcagtatattcattaaaactgtcttgtttcctcttttcctcc 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 cccagggcatgcagtatattcattaaaactgtcttgtttcctcttttcctcc 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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