BAC Information

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BAC

Clone NameMSMg01-436H16
Chromosome10 (Build37)
Map Location 91,868,732 - 92,037,652
singlet/doubletdoublet
Overlap geneLOC216229
Upstream geneLOC100041799, LOC667203
Downstream geneLOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436H16.T7 (MSMg01no436_h16.b1)MSMg01-436H16.TJ (MSMg01no436_h16.g1)
ACCAG527536AG527537
length752759
length of high quality
(start - end)		591 (47 - 637)536 (73 - 608)
definitionCHROMAT_FILE: MSMg01no436_h16.b1 PHD_FILE: MSMg01no436_h16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:33 2005CHROMAT_FILE: MSMg01no436_h16.g1 PHD_FILE: MSMg01no436_h16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,868,732 - 91,869,316)(92,037,117 - 92,037,652)
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATAATTTTTCACCAATCCCCACAAAGAANAATTGAGTTCCTGA
GTGTCATGAGTGTTTCTTATTCAGTGAGGCACTCGGTGAATTGTGCTGTA
TACACAGGAGGAATTTTATCCATATTTTCTTATTTATATATCGATTCATA
TAGTTTTAGCGCTGGGTTTGAGTTTAGGGCTTTGGGCATGCGAGGCAAAC
ACTTCTGAGTTACATCCTCCTTGTCCATGCTACGGGTTATACCCGCAACC
CTTCATTCACATCTTTTTGAGGACATAAAGAAAGGTAGCTGACTAACAGC
CCAGTTTGCCCGCGGCGTATCTGCATATTGTTCTATGCTAGGTTGCTGTA
CTGAAGATCCTTAGTACTTAATCCTACCACATCTCTGAGCCGTTCCTGAT
CCCCACCTACAGCGTAGCAAGTACGCCATGTGCTCCCCTGTGTTTCCCTG
GGGCATATGTTCCCCTCGCCTGTCCTCCCTGTGGACAGAGTAACCCCATG
CTCCCCCTTTGGCAGATCTTTACCTGCTCCCCAATGTTCATTTTTGAAAA
TACTCATAACAGAATGTGTTAGGGAAGCATTTTTTTCCATAGCTCAGGTT
ACTGGCCATGGAATGAGCTACAGGTGCTTGAGTTAGGGGTAAGACCATGT
GGGACCTTTTATAACTGTGAAATGATCCCGTACACCCTCTTCAGTCCTTC
TT

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCAATAAATATTTGTTGAGTGAATAAACA
CATGCAAGTTTTCCTTGCTATTTGGTAAGATCCTTGATGCATAGACTGAC
GTTCTAAAGACACTCTATTTGGATCAATATGGAACTGATTCTTATATCCA
CTGTTTAGTCTCCTGCAAGACAGCCCACCTCAGCCCTACCCTATGCCAGG
GTTCTCCTCTCAATGGATGGCAAGTAGGTTCTGGAACCAGATATTTTTCA
TGTTAATGATCATTTTGGCTTCAATAGAGTATGTCCATTAGATGGTAGGT
AGTCCCCATTTGTTCTAAGTCCAACCCAGTTCAAGAAAAAACAGCTGTGG
CTTCCTTCAGGTTCAGCTTTGTTCTGCTGCTCTTTCTTAGGGAAAGTGTC
TGAGTAGAACACATACTATTCCCTTTCTCCTTTGTTCCTCTTTGGCAAAA
AGAAAGCTGCTTATGAATTTGCCTATGTGGATACTATTCTTCTTTTCCTA
GGCTGCCTGACCCAAGACCCCCTACATTGATGGGAAAGGTGGAAAGGAAG
AGATGAAACTTACTTATTTCACTTGGATAACGCTTTTTAGATGTGACTGT
TTGTTTGTTTGCTTGGTTGTCTGGACCACCCTGGTTCTCTTTCTTTCTCT
CTCCCTTCTTTTTTTTTTCTCTTTATCTTCCTTTTATTTTTACTCTTTTT
TTTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_h16.b1 MSMg01no436_h16.b1 CHROMAT_FILE:
MSMg01no436_h16.b1 PHD_FILE: MSMg01no436_h16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:33 2005
         (591 letters)



>mm_chr10_91868528_91869518
          Length = 991

 Score = 1087 bits (562), Expect = 0.0
 Identities = 579/585 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccataatttttcaccaatccccacaaagaanaattgagttcctgagtgtcatgag 64
           |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattccataatttttcagcaatccccacaaagaaaaattgagttcctgagtgtcatgag 264

                                                                       
Query: 65  tgtttcttattcagtgaggcactcggtgaattgtgctgtatacacaggaggaattttatc 124
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 tgtttcttattcagtgaggcactcggcgaattgtgctgtatacacaggaggaattttatc 324

                                                                       
Query: 125 catattttcttatttatatatcgattcatatagttttagcgctgggtttgagtttagggc 184
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 catattttcttatttatatatcgattcatatagttttagcgccgggtttgagtttagggc 384

                                                                       
Query: 185 tttgggcatgcgaggcaaacacttctgagttacatcctccttgtccatgctacgggttat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgggcatgcgaggcaaacacttctgagttacatcctccttgtccatgctacgggttat 444

                                                                       
Query: 245 acccgcaacccttcattcacatctttttgaggacataaagaaaggtagctgactaacagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acccgcaacccttcattcacatctttttgaggacataaagaaaggtagctgactaacagc 504

                                                                       
Query: 305 ccagtttgcccgcggcgtatctgcatattgttctatgctaggttgctgtactgaagatcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccagtttgcccgcggcgtatctgcatattgttctatgctaggttgctgtactgaagatcc 564

                                                                       
Query: 365 ttagtacttaatcctaccacatctctgagccgttcctgatccccacctacagcgtagcaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttagtacttaatcctaccacatctctgagccgttcctgatccccacctacagcgtagcaa 624

                                                                       
Query: 425 gtacgccatgtgctcccctgtgtttccctggggcatatgttcccctcgcctgtcctccct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtacgccatgtgctcccctgtgtttccctggggcatatgttcccctcgcctgtcctccct 684

                                                                       
Query: 485 gtggacagagtaaccccatgctccccctttggcagatctttacctgctccccaatgttca 544
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 685 gtggacagagtaaccccatgctcctcctttggcagatctttacctgctccccaatgttca 744

                                                        
Query: 545 tttttgaaaatactcataacagaatgtgttagggaagcatttttt 589
           |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 745 tttttgaaaatactcataacagaatgggttagggaagcatttttt 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no436_h16.g1 MSMg01no436_h16.g1 CHROMAT_FILE:
MSMg01no436_h16.g1 PHD_FILE: MSMg01no436_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:33 2005
         (536 letters)



>mm_chr10_92036917_92037852
          Length = 936

 Score = 1036 bits (536), Expect = 0.0
 Identities = 536/536 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caataaatatttgttgagtgaataaacacatgcaagttttccttgctatttggtaagatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 caataaatatttgttgagtgaataaacacatgcaagttttccttgctatttggtaagatc 677

                                                                       
Query: 61  cttgatgcatagactgacgttctaaagacactctatttggatcaatatggaactgattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cttgatgcatagactgacgttctaaagacactctatttggatcaatatggaactgattct 617

                                                                       
Query: 121 tatatccactgtttagtctcctgcaagacagcccacctcagccctaccctatgccagggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tatatccactgtttagtctcctgcaagacagcccacctcagccctaccctatgccagggt 557

                                                                       
Query: 181 tctcctctcaatggatggcaagtaggttctggaaccagatatttttcatgttaatgatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tctcctctcaatggatggcaagtaggttctggaaccagatatttttcatgttaatgatca 497

                                                                       
Query: 241 ttttggcttcaatagagtatgtccattagatggtaggtagtccccatttgttctaagtcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttttggcttcaatagagtatgtccattagatggtaggtagtccccatttgttctaagtcc 437

                                                                       
Query: 301 aacccagttcaagaaaaaacagctgtggcttccttcaggttcagctttgttctgctgctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aacccagttcaagaaaaaacagctgtggcttccttcaggttcagctttgttctgctgctc 377

                                                                       
Query: 361 tttcttagggaaagtgtctgagtagaacacatactattccctttctcctttgttcctctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tttcttagggaaagtgtctgagtagaacacatactattccctttctcctttgttcctctt 317

                                                                       
Query: 421 tggcaaaaagaaagctgcttatgaatttgcctatgtggatactattcttcttttcctagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tggcaaaaagaaagctgcttatgaatttgcctatgtggatactattcttcttttcctagg 257

                                                                   
Query: 481 ctgcctgacccaagaccccctacattgatgggaaaggtggaaaggaagagatgaaa 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctgcctgacccaagaccccctacattgatgggaaaggtggaaaggaagagatgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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