Query= MSMg01no436_p21.b1 MSMg01no436_p21.b1 CHROMAT_FILE:
MSMg01no436_p21.b1 PHD_FILE: MSMg01no436_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:13 2005
(575 letters)
>mm_chr10_57072967_57073941
Length = 975
Score = 868 bits (449), Expect = 0.0
Identities = 461/465 (99%)
Strand = Plus / Minus
Query: 1 acagctcatgtactttctaagtctatactccttcatcagagcttacctgtgagaggagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 acagctcatgtactttctaagtctatactccttcatcagagcttacctgtgagaggagct 406
Query: 61 tccttattgcccaagacgaaacacacctcttaataatccagtccctttacaaacaccaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tccttattgcccaagacgaaacacacctcttaataatccagtccctttacaaacaccaag 346
Query: 121 gagcagctgattaccttgaaaacactttaaaaatggcgtttcttatcaaaactgaaaaga 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 345 gagcagctgattaccttgaaaacactttaaaaatggggtttcttatcaaaactgaaaaga 286
Query: 181 agagaacatcagattgacaaaatataatctcaaactcttttgccattttattctatttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 agagaacatcagattgacaaaatataatctcaaactcttttgccattttattctatttaa 226
Query: 241 ctgttatgttaaacaatgaattgttatggattttttcatacaatatttctgattatggct 300
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ctgttatgggaaacaatgaattgttatggattttttcatacaatatttctgattatggct 166
Query: 301 tcctctctcccaactcttcctggagccacctcaccgcttcacccacttgaatccacacct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 165 tcctctctcccaactcttcctggagccacctcaccgcttcacccacttgaatccacatct 106
Query: 361 ttcctttccatcgttagatgacaaataggcatctatgtatttatctatctattgtttata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 ttcctttccatcgttagatgacaaataggcatctatgtatttatctatctattgtttata 46
Query: 421 atatccacatataaaagaatataaaataacataaaacaaacagaa 465
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 atatccacatataaaagaatataaaataacataaaacaaacagaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_p21.g1 MSMg01no436_p21.g1 CHROMAT_FILE:
MSMg01no436_p21.g1 PHD_FILE: MSMg01no436_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:13 2005
(517 letters)
>mm_chr10_56844257_56845175
Length = 919
Score = 855 bits (442), Expect = 0.0
Identities = 498/522 (95%), Gaps = 12/522 (2%)
Strand = Plus / Plus
Query: 1 atgttttgtctccaaaaaaaaaaaaaaagacaaacaaaacaaaacacccccc----aaag 56
|||||||||||||||||||| ||| |||||||||||||||||||||||| ||||
Sbjct: 205 atgttttgtctccaaaaaaacaaa----gacaaacaaaacaaaacaccccccccccaaag 260
Query: 57 ggaaataatgagaaagaaggaaataacatttggacactgaaaaaaaa-ttgcctttgttt 115
||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 261 agaaataatgggaaagaaggaaataacatttggacattgaaaaaaaaattgcctttgttt 320
Query: 116 gcacctgcatgtagaaaatcagatgcctcactattttgttacattttgttttacactcct 175
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 321 gcacctgcatgtagaaaatcagatgccttactattttgttatattttgttttacactcct 380
Query: 176 atggctgatttcatcccattctcttgtcatgaatttcacaatgaaaggaaaagtctgagg 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggctgatttcatcccattctcttgtcatgaatttcacaatgaaaggaaaagtctgagg 440
Query: 236 tgtccagaatttcctgctgtcgtaaatcacatcatgatgattctaagtgattgtcaccta 295
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 tgtccagaatttcctgccatcgtaaatcacaccatgatgattctaagtgattgtcaccta 500
Query: 296 ttgtccttgattttggtattttttcctttttctatctgtgtgtccttcaacactcaccat 355
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 ttgtccttgattttggtattttttcctttctctatctgtgtgtccttcaacactcaccat 560
Query: 356 gcttcctcgtgtctgctgaggtcaatagtggggaactgtagatgagccaaagaccctaac 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttcctcgtgtctgctgaggtcaatagtggggaactgtagatgagccaaagaccctaac 620
Query: 416 tgtatactctccagtctcctgcttcacatcatagactaaccccactgcttacttaagtgc 475
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtatgctctccagtctcct---tcacatcatagactaaccccactgcttacttaagtgc 677
Query: 476 aggtacttacatgctggtactattttattctgcatgctttat 517
|||||||||||||| |||||||||||||||||||||||||||
Sbjct: 678 aggtacttacatgccggtactattttattctgcatgctttat 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 919
Length adjustment: 10
Effective length of query: 507
Effective length of database: 909
Effective search space: 460863
Effective search space used: 460863
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
