BAC Information

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BAC

Clone NameMSMg01-439P16
Chromosome10 (Build37)
Map Location 72,778,320 - 72,936,827
singlet/doubletdoublet
Overlap geneLOC432471
Upstream geneZwint, LOC544705
Downstream geneLOC100039981, LOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439P16.T7 (MSMg01no439_p16.b1)MSMg01-439P16.TJ (MSMg01no439_p16.g1)
ACCAG530204AG530205
length758779
length of high quality
(start - end)
501 (64 - 564)238 (71 - 308)
definitionCHROMAT_FILE: MSMg01no439_p16.b1 PHD_FILE: MSMg01no439_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:14 2005CHROMAT_FILE: MSMg01no439_p16.g1 PHD_FILE: MSMg01no439_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,778,320 - 72,778,820)(72,936,590 - 72,936,827)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATAGACTGACGGATGGACACATTTCTTCTGGACCTTAGTGATACATAG
AACAAATGTTGTAAAATAATAATCACTTTTCCCTTGCATAAACTAATCAA
CAACAACAACAACAAAGGCAAGAAGATGAGAGGTAAATGTGAATCAGATA
AAGAGGAAAGGAGATATGGATAAAAACAAATTATAGAAATGACAGCCCTC
ACCAGAGGATGAGCCTCTCACAGTTACTGTAGACTCTGGAGCTTCAGTAG
AGTATCCAGGGATCTCACTCATCTAAAATCATGCCTATACGGACAGGTTA
GGGTGCAGTTTATAGGAATTAGGTATGGCAGCACGAACTGATGTCTGAGA
AGAACACTTGTCAAAAAGCATCAGAAATAATGCTTTTGCCCTTGTTATAA
AATAGAAAAAATAGTACAAGTAACAGCTGTCCATTGCACAGGGCAGCCTG
CTTCTGGCTTTGCAGGAAAAGCAGACAGCCTCTGTTAAATATAAATCAGC
AGATTGTTCCTTCTATAATTAGATGCCACAGCCCAACGTATCTTAAATAA
TAGCTCGGAATAGAAATGGGCAGGAGTCCTATTTTAGTGCCCTCCGGAGT
GCCGCTTTACGATGCCAGTCCAAATTCTCCCAGTCATGTTTTACCCACCC
CCTACCTCTGTGTTATTAACAAAAAAATCTCCCCTATGCTCTCTCCAACC
ATTCTACT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATGCTGCAAGAAATTGGTTCTTGATTCAA
ATATTTTGAAACAAAATACTATCTACTGAAGCTAAACAGATGCACAATGT
ATCAACCATCAATTACATAATGTGACATATGAACACAGGGAGAAAATAGG
GATAGTAATAAAATGTTCATAGTAGTTTTGTTTATGATACACCAAACTTT
AAAGTAGCCAAAATTTTCAATATGATTATGGAAATAAATTCTAGCATTCA
AACGTTCATATTTATTAAGGAACATTGATCTTTGTTCCTGTTCTACATGA
TTGGATCTTATAAACTTTATATCAATCAAAATAATCCAAAAGAAAGCATT
GCATGTATGTATGTACATATGTATGTATATATTCATAAAACTTTAAAACA
GACAGAGCTATCTACAGGAATAGTGTGCAAAACTAATTTTATGTCTTGGG
ATTGAGCACTGTTTTTAGGTCTGTGAAAAGCTGTTGCAATGCCCCAGCCA
TTAATTTTTGAACTATTTTCTTTCACTTTCCCGTATTCCCCCTGATTATG
CCCTCCTCTTTTCTACCCCCATCTCTATGCCGACTTCTCCGATTTTCTTT
TTTCCAGAGATAAAAACCCCACATTCTTTCGAATCGCCCTCTAATAAATT
TATTTCTTAATTACACCACCCCCTCCACCTTATTTCATACCCCGTTCTTA
CCTCTCTTTCATCCCCCCTTTTTTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_p16.b1 MSMg01no439_p16.b1 CHROMAT_FILE:
MSMg01no439_p16.b1 PHD_FILE: MSMg01no439_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:14 2005
         (501 letters)



>mm_chr10_72778120_72779020
          Length = 901

 Score =  946 bits (489), Expect = 0.0
 Identities = 498/501 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatggacacatttcttctggaccttagtgatacatagaacaaatgttgtaaaataataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatggacacatttcttctggaccttagtgatacatagaacaaatgttgtaaaataataat 260

                                                                       
Query: 61  cacttttcccttgcataaactaatcaacaacaacaacaacaaaggcaagaagatgagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacttttcccttgcataaactaatcaacaacaacaacaacaaaggcaagaagatgagagg 320

                                                                       
Query: 121 taaatgtgaatcagataaagaggaaaggagatatggataaaaacaaattatagaaatgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatgtgaatcagataaagaggaaaggagatatggataaaaacaaattatagaaatgac 380

                                                                       
Query: 181 agccctcaccagaggatgagcctctcacagttactgtagactctggagcttcagtagagt 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccctcaccagaggatgatcctctcacagttactgtagactctggagcttcagtagagt 440

                                                                       
Query: 241 atccagggatctcactcatctaaaatcatgcctatacggacaggttagggtgcagtttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atccagggatctcactcatctaaaatcatgcctatacggacaggttagggtgcagtttat 500

                                                                       
Query: 301 aggaattaggtatggcagcacgaactgatgtctgagaagaacacttgtcaaaaagcatca 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaattaggtatggcagcaggaactgatgtctgagaagaacacttgtcaaaaagcatca 560

                                                                       
Query: 361 gaaataatgcttttgcccttgttataaaatagaaaaaatagtacaagtaacagctgtcca 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaataatgctttttcccttgttataaaatagaaaaaatagtacaagtaacagctgtcca 620

                                                                       
Query: 421 ttgcacagggcagcctgcttctggctttgcaggaaaagcagacagcctctgttaaatata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgcacagggcagcctgcttctggctttgcaggaaaagcagacagcctctgttaaatata 680

                                
Query: 481 aatcagcagattgttccttct 501
           |||||||||||||||||||||
Sbjct: 681 aatcagcagattgttccttct 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no439_p16.g1 MSMg01no439_p16.g1 CHROMAT_FILE:
MSMg01no439_p16.g1 PHD_FILE: MSMg01no439_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:14 2005
         (238 letters)



>mm_chr10_72936390_72937027
          Length = 638

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgctgcaagaaattggttcttgattcaaatattttgaaacaaaatactatctactgaa 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 catgctgcaagaaattgtttcttgattcaaatattttgaaacaaaatactatctactgaa 379

                                                                       
Query: 61  gctaaacagatgcacaatgtatcaaccatcaattacataatgtgacatatgaacacaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 378 gctaaacagatgcacaatgtatcaaccatcaattacataatgtgacatatgaacacaagg 319

                                                                       
Query: 121 agaaaatagggatagtaataaaatgttcatagtagttttgtttatgatacaccaaacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agaaaatagggatagtaataaaatgttcatagtagttttgtttatgatacaccaaacttt 259

                                                                     
Query: 181 aaagtagccaaaattttcaatatgattatggaaataaattctagcattcaaacgttca 238
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaagtagccaaatttttcaatatgattatggaaataaattctagcattcaaacgttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)