BAC Information

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BAC

Clone NameMSMg01-440C20
Chromosome10 (Build37)
Map Location 75,217,316 - 75,217,634
singlet/doubletsinglet
Overlap geneCabin1
Upstream geneEG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1, Susd2
Downstream geneDdt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440C20.T7 (MSMg01no440_c20.b1)MSMg01-440C20.TJ (MSMg01no440_c20.g1)
ACCAG530355AG530356
length750782
length of high quality
(start - end)
319 (84 - 402)88 (86 - 173)
definitionCHROMAT_FILE: MSMg01no440_c20.b1 PHD_FILE: MSMg01no440_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:31 2005CHROMAT_FILE: MSMg01no440_c20.g1 PHD_FILE: MSMg01no440_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATGACCG
GGCGGAATTCCTTCCTAGATTCGAATAGAAGCCTTAAATGCCAGCTCCAC
GATTGAGGATGACCATGAAGGAAGCTTCAAAAGTCACAAAATCCAGACAA
AGGAGGCTCAGGTATGCACTCTGAGGTCTGCTTCCGAGGAAGCTCCTGCT
GCTCAGCTTAAATGAATCCCTTGTGTCCTCAGAGGAGTTGTAAGGGGGAT
GGCGCGCTGCAGACGGCCGCCTCTCCACCTCAGGTCGGACTTGTTTCCCT
CGGGAGATGGTCATGCTGAAGAACTAACTGAATGCTCTTTGTGTTGTTGC
CTTTTACCTACCACCTGCCCTCCCCCTTGTGCGTGCGTGCGTGCGTGTGC
ACACGGGACTCTACAGTAATGAGGGCTGAGCACTGATTAGTAGATTTTCT
TTGACTGCAAAAGTTGGATCTGAACGCTTAAAAATCCACTCAAAACCCTC
CCCTTTGTGCGCAAATTTTTTTGCGAGAGACAGATAAATTACACCTTTTT
CTTTTTCTTTTATGTTATTCTTTATCAAAAAATAATAATTCCCACAACCC
NNTTTTCTTCATATTTATAACAACGATCGCACGGGTTTGAAGTTACACCT
CACATCCTTCCTTCTTTCTTTATCACCACTTCATATCACCTTACTCTATC
ACATTTTATTTTCCCCTTTTCTTTCTTTTATTCTCATTATTCTTTATTTG

GGGTAATTNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTAGTTCTAGGC
AGAGATATCCTGGCAGTGGTTCTGAGGTCTTCCCAGATATAACAAGCAGG
TAGGATCTGGGGCTTCACACAGGNCNNTAAAGGAAAGGGCCCCTTTCCTA
AGGGGAAAAAAACGGGGGAAGGAAAAAGGGGTTCCCCCTGGGGGGAAAAG
GGTTCCCCCGGGCCCCGGGTCGGAAGGGCCCCCGGAACCCCGGGTTTCCA
GGGGAAACCGGGGAGGGGCTCCCGCGAAAAATTCTCCCGGGGAACCCTCC
CCGGGGAAAAAAATATCTCCCGGGGGTTCCCCCCGCCAAAATAAATAGGG
GCGGCGGGGGGGGAAACCCCCCCCCGGTGTGCGGTTTTTTATAAACTCGT
AGCGGGGGGGCTCGGGGGGGGGCTCCCCCGATGGGGGGGCCCTCTCCCCC
CCCTTTCTTTGCTTCTTTTGTTGTAAAAAAAAAAAAAAAAGCATCTTGGT
GTGTTGGTGGCACTATTTTCTCTCATCCCATCCCTTCTTTTATATATTTA
TCGCTGGTTGGTGGTCGAGTGTGATGTACAGTGTGACGATCCTCTACCTG
TTTGTAAAATAGGAGCACGTTGGCGTCCGCACTTTCACATTCCATTGTTA
AACCTTATCCATCACCCCCGTTATGTCCTCCTACTTTTTTACCTGTATAG
TCTTCCTCTCTTTATTAACTTTATACTTTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_c20.b1 MSMg01no440_c20.b1 CHROMAT_FILE:
MSMg01no440_c20.b1 PHD_FILE: MSMg01no440_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:31 2005
         (319 letters)



>mm_chr10_75217116_75217834
          Length = 719

 Score =  609 bits (315), Expect = e-179
 Identities = 318/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaatgccagctccacgattgaggatgaccatgaaggaagcttcaaaagtcacaaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ttaaatgccagctccacgattgaggatgaccatgaaggaagcttcaaaagtcacaaaatc 460

                                                                       
Query: 61  cagacaaaggaggctcaggtatgcactctgaggtctgcttccgaggaagctcctgctgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 cagacaaaggaggctcaggtatgcactctgaggtctgcttccgaggaagctcctgctgct 400

                                                                       
Query: 121 cagcttaaatgaatcccttgtgtcctcagaggagttgtaagggggatggcgcgctgcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cagcttaaatgaatcccttgtgtcctcagaggagttgtaagggggatggcgcgctgcaga 340

                                                                       
Query: 181 cggccgcctctccacctcaggtcggacttgtttccctcgggagatggtcatgctgaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cggccgcctctccacctcaggtcggacttgtttccctcgggagatggtcatgctgaagaa 280

                                                                       
Query: 241 ctaactgaatgctctttgtgttgttgccttttacctaccacctgccctcccccttgtgcg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 279 ctaactgaatgctctttgtgttgttgccttttacctaccacctgccctcccccttgtgtg 220

                              
Query: 301 tgcgtgcgtgcgtgtgcac 319
           |||||||||||||||||||
Sbjct: 219 tgcgtgcgtgcgtgtgcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)