Query= MSMg01no441_a04.b1 MSMg01no441_a04.b1 CHROMAT_FILE:
MSMg01no441_a04.b1 PHD_FILE: MSMg01no441_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:38 2005
(575 letters)
>mm_chr10_18709599_18710573
Length = 975
Score = 980 bits (507), Expect = 0.0
Identities = 538/549 (97%), Gaps = 5/549 (0%)
Strand = Plus / Plus
Query: 5 gaattcatagaattaccagtggggttgcttctttctatatgggaagtacaaatacttaaa 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcatagaatgaacagtggggttgcttctttctatatgggaagtacaaatacttaaa 263
Query: 65 gtcatagatagaccttaagaattaagtacagacctatagtcccttttt-agtgattataa 123
||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 264 gtcatggatagaccttaagaattaagtatagacctatagtcccttttttagtgattataa 323
Query: 124 aagtataataaacattgttaaaacacccatattatggcctggagtgatgacacacacctt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagtataataaacattgttaaaacacccatattatggcctggagtgatgacacacacctt 383
Query: 184 taatcccagcacttgagaggcaggggtaggcagatctcttgagtttgaggccattttggt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taatcccagcacttgagaggcaggggtaggcagatctcttgagtttgaggccattttggt 443
Query: 244 ctacacagtagtcaagacagccagtgtttgttacacagaaaaaaataaacaacaagacca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctacacagtagtcaagacagccagtgtttgttacacagaaaaaaataaacaacaagacca 503
Query: 304 caaaacaaaaacaaataaaaatactcatattataaaggggaaggggagaaattacattta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caaaacaaaaacaaataaaaatactcatattataaaggggaaggggagaaattacattta 563
Query: 364 tattattaccaaagagaagatattaccatatatgttttggcatacttccttctgggactt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 564 tattattaccaaagagaagatattaccatatatgttttggcatacttccttctgggattt 623
Query: 424 ctgggcaatctctgtgacatgtcccagctactttttaaaagatgttttgatttatttatt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgggcaatctctgtgacatgtcccagctactttttaaaagatgttttgatttatttatt 683
Query: 484 ttattacctg-g-gnatctctctctctctttctctctctctctctttctctctctctctc 541
|||||||||| | | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 684 ttattacctgtgtg--tctctctctctctttctctctctctctctctctctctctctctc 741
Query: 542 tctctctct 550
|||||||||
Sbjct: 742 tctctctct 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_a04.g1 MSMg01no441_a04.g1 CHROMAT_FILE:
MSMg01no441_a04.g1 PHD_FILE: MSMg01no441_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:39 2005
(606 letters)
>mm_chr10_18883508_18884515
Length = 1008
Score = 1065 bits (551), Expect = 0.0
Identities = 594/609 (97%), Gaps = 4/609 (0%)
Strand = Plus / Minus
Query: 1 tcctctatcacacacatacacacatgcaaagttatgagtgaaccaaccatttcatattcg 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tcctctctcacacacatacacacatgcaaagttatgagtgaaccaaccatttcatattcg 749
Query: 61 atctgcagctggtgagaa-ccatggtactgagtcaataccttgaaggggaaactcctcac 119
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 748 atctgcagctggtgagaagcc-tggtactgagtcaataccttgaaggggaaactcctcac 690
Query: 120 atgtcatgattatgactgaatttatcaagg--aaaaaaaaaggcctcttttattccagac 177
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 689 aggtcatgattatgactgaatttatcaaggaaaaaaaaaaaggcctcttttattccagac 630
Query: 178 cagacttggaacacacagacacagtctttctcaatgtacaaggtacattgttggcactct 237
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 629 cagacttggaacacacagacacagtctttctcaatgtgcaaggtacattgttggcactct 570
Query: 238 agagatctattatctgtctctgctcactatataaagaaattctctatacagaatattctt 297
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agagatctattaactgtctctgctcactatataaagaaattctctatacagaatattctt 510
Query: 298 ctttaacaacctcaatttcaataggcaatacgggaaacacacaacaagtcaaaactgtgt 357
||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||| |
Sbjct: 509 ctttaacaacctcaatttcaacaggcaatacgggaaatagacaacaagtcaaaactgtat 450
Query: 358 tgtatgtggagtgctagctttaccaaaagatgaaggacatggatgcgggaattcagtaac 417
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 449 tgtatgtggagtgctagctttaccaaaagatgaagcacatggatgcgggaattcagtaac 390
Query: 418 tgtttattggcagcttgtccatgattgccactttacaggatacaaaatggacagtgtcat 477
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgttttttggcagcttgtccatgattgccactttacaggatacaaaatggacagtgtcat 330
Query: 478 cactgcctcaaggacacagggaagaggaaaggaggaggatttatggcacggctattatac 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 329 cactgcctcaaggacacagggaagaggaaaggaggaggatttatggcacggctattctac 270
Query: 538 ggcagttaattctatcttagttctcataacacccctccaggcagtcagagaggaaagtct 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggcagttaattctatcttagttctcataacacccctccaggcagtcagagaggaaagtct 210
Query: 598 acctcagca 606
|||||||||
Sbjct: 209 acctcagca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1008
Length adjustment: 10
Effective length of query: 596
Effective length of database: 998
Effective search space: 594808
Effective search space used: 594808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
