BAC Information

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BAC

Clone NameMSMg01-441O18
Chromosome10 (Build37)
Map Location 91,259,999 - 91,425,769
singlet/doubletdoublet
Overlap genenone
Upstream geneAnks1b, Apaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
Downstream geneLOC100041799, LOC667203, LOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441O18.T7 (MSMg01no441_o18.b1)MSMg01-441O18.TJ (MSMg01no441_o18.g1)
ACCAG531691AG531692
length778784
length of high quality
(start - end)		507 (79 - 585)481 (74 - 554)
definitionCHROMAT_FILE: MSMg01no441_o18.b1 PHD_FILE: MSMg01no441_o18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:53 2005CHROMAT_FILE: MSMg01no441_o18.g1 PHD_FILE: MSMg01no441_o18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,259,999 - 91,260,505)(91,425,370 - 91,425,769)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAGAGCATCCGCGGAATCA
ATCCAGTCCCCCAGTAGAACAGNTAGGGATCTTAAGCACTGAACCATCTC
TTCAGCCCCAACTTGGAAGGCATTTCTGACAAGAGCTTAGTACTTATATA
AGTGCTTATTATGTACTTCACAGATGTAAACTAATTTTCTTGAAAGAGAG
CATTGTTAATATCCTTGTTTTATAGAGAGGTTATTAAGCTTGCCTGGTTA
AAATTGCTGAGAAGAAGGATTCAATATTAAGGAAAACCTTAACCTATACT
AATTCCTTATGTTGCTTCTCCAGTGGAAGAAGTAACCTAATATACTTAGA
ATCTCACCTCATAGAGATTAGTGTGGCTTCTATATTCATTTACTTTCTTC
TCTCCAGTAAAATCCTATTCCAAAGGCAGTGATTGAATCCATTAGTTTGC
TTTGTTATTTTTAAGACAGGTCTCATGCAGCCCAGGGTAGCCTTGAACTC
TGTGTATAGCTGTGAATGGTCTTTAACTCTTGCTACTCCTGCCTAAACCT
CACAAGTCAACAGGACTAGTTTGTGCGGTGCTAAGAATTAAAACCAGAAC
TTTATGTATGCCAGACTGGCATTCTACCAATGGAGCCTATCCCAAACCCC
TATAGTTTTTTTTCTTTGATTATTTTCACAGAAAGGAAAATACAATGTAA
TTTCCCGGTAGAAAACCCCCAGAAACCCCAGGGGTTTGCATCTTCTTTGT
CTAGACCAGTTTTTAATGGTCCACCCAA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCCTTCGGAGTTCTATGAAAATGAAG
AAATATACTGCTAAATTCACGGCTGCATTTCAAAGGGCCTATTTTTAAAC
CTAACTCCATTTTCCAACTTGATGTCACTTTCAACATTGACTTCCAGTTT
TCTCCCCTCTATTGAAATGTTGAAGATTTCTTTTTTTATACTCAGACACA
TTGCTTTGCATTTTCAAAGTCAAGGCTCATTGTTATTCCTTCTCCAGGTC
CTTTTGTATCATTTCCCTGATATCTCTGGTATTCATAATATCTCCCAAAT
GAGTACCATCTGTGAATCTCATCAGTGCGCTGTCTGTTCCCTATTCTGCC
TTATGAATGAAGATGTTAAATAAGAACAGACATTGTAGGGCAGCTGCTTT
CTGCAGCACCCACCCGGCATGCTCTCAATGCCTATGGGACCTTCTTGCTG
ACATTCCTTACATGAGGCTACAGTCCCTCAAGTAGCTTTGAACCTCAAGT
GATAAAGATGCTCCAGTGAATTAAAACTTTTGAAATATGATACAGCATGG
TTTATTTTAATTTCTATTANGTTCTGAGTTGTGGAAAGCAANTGGCTGAT
CTCCTTTGCTCTCTATGTCTTCTCTACCCGNAAATTAAAACACTCTGCTC
TTGGGTGATAAACAAAAAAACTAAATGTTGGAAAGCTTTATTTCTCAATC
CCGAAGAAAAAAAAAAATGGGTAGAAGGTCCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_o18.b1 MSMg01no441_o18.b1 CHROMAT_FILE:
MSMg01no441_o18.b1 PHD_FILE: MSMg01no441_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:53 2005
         (507 letters)



>mm_chr10_91259799_91260705
          Length = 907

 Score =  949 bits (491), Expect = 0.0
 Identities = 503/507 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttaagcactgaaccatctcttcagccccaacttggaaggcatttctgacaagagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttaagcactgaaccatctcttcagccccaacttggaaggcatttctgacaagagctt 260

                                                                       
Query: 61  agtacttatataagtgcttattatgtacttcacagatgtaaactaattttcttgaaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtacttatataagtgcttattatgtacttcacagatgtaaactaattttcttgaaagag 320

                                                                       
Query: 121 agcattgttaatatccttgttttatagagaggttattaagcttgcctggttaaaattgct 180
           |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 321 agcattgttaatttccttgttttatagaaaggttattaagcttgtctggttaaaattgct 380

                                                                       
Query: 181 gagaagaaggattcaatattaaggaaaaccttaacctatactaattccttatgttgcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaagaaggattcaatattaaggaaaaccttaacctatactaattccttatgttgcttc 440

                                                                       
Query: 241 tccagtggaagaagtaacctaatatacttagaatctcacctcatagagattagtgtggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccagtggaagaagtaacctaatatacttagaatctcacctcatagagattagtgtggct 500

                                                                       
Query: 301 tctatattcatttactttcttctctccagtaaaatcctattccaaaggcagtgattgaat 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 tctatattcatttactttcttctctccaataaaatcctattccaaaggcagtgattgaat 560

                                                                       
Query: 361 ccattagtttgctttgttatttttaagacaggtctcatgcagcccagggtagccttgaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccattagtttgctttgttatttttaagacaggtctcatgcagcccagggtagccttgaac 620

                                                                       
Query: 421 tctgtgtatagctgtgaatggtctttaactcttgctactcctgcctaaacctcacaagtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgtgtatagctgtgaatggtctttaactcttgctactcctgcctaaacctcacaagtc 680

                                      
Query: 481 aacaggactagtttgtgcggtgctaag 507
           |||||||||||||||||||||||||||
Sbjct: 681 aacaggactagtttgtgcggtgctaag 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no441_o18.g1 MSMg01no441_o18.g1 CHROMAT_FILE:
MSMg01no441_o18.g1 PHD_FILE: MSMg01no441_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:53 2005
         (481 letters)



>mm_chr10_91425370_91426250
          Length = 881

 Score =  774 bits (400), Expect = 0.0
 Identities = 400/400 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccttcggagttctatgaaaatgaagaaatatactgctaaattcacggctgcatttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 agccttcggagttctatgaaaatgaagaaatatactgctaaattcacggctgcatttcaa 341

                                                                       
Query: 61  agggcctatttttaaacctaactccattttccaacttgatgtcactttcaacattgactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agggcctatttttaaacctaactccattttccaacttgatgtcactttcaacattgactt 281

                                                                       
Query: 121 ccagttttctcccctctattgaaatgttgaagatttctttttttatactcagacacattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ccagttttctcccctctattgaaatgttgaagatttctttttttatactcagacacattg 221

                                                                       
Query: 181 ctttgcattttcaaagtcaaggctcattgttattccttctccaggtccttttgtatcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ctttgcattttcaaagtcaaggctcattgttattccttctccaggtccttttgtatcatt 161

                                                                       
Query: 241 tccctgatatctctggtattcataatatctcccaaatgagtaccatctgtgaatctcatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 tccctgatatctctggtattcataatatctcccaaatgagtaccatctgtgaatctcatc 101

                                                                       
Query: 301 agtgcgctgtctgttccctattctgccttatgaatgaagatgttaaataagaacagacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 agtgcgctgtctgttccctattctgccttatgaatgaagatgttaaataagaacagacat 41

                                                   
Query: 361 tgtagggcagctgctttctgcagcacccacccggcatgct 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  tgtagggcagctgctttctgcagcacccacccggcatgct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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