BAC Information

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BAC

Clone NameMSMg01-442F05
Chromosome10 (Build37)
Map Location 118,242,224 - 118,242,557
singlet/doubletsinglet
Overlap geneLOC100042850
Upstream geneRap1b, Mdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng, LOC100043478
Downstream geneDyrk2, LOC668223, LOC100042861, LOC674417, Cand1, Grip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442F05.T7 (MSMg01no442_f05.b1)MSMg01-442F05.TJ (MSMg01no442_f05.g1)
ACCAG531998AG531999
length822790
length of high quality
(start - end)
69 (111 - 179)338 (82 - 419)
definitionCHROMAT_FILE: MSMg01no442_f05.b1 PHD_FILE: MSMg01no442_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:26 2005CHROMAT_FILE: MSMg01no442_f05.g1 PHD_FILE: MSMg01no442_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTCTGATATAGTGCGAGGCCTGGACGACGCCTGTTTCACAACGATAC
GCGAAACTCCAAGATATCAATTGTTTCCACTGCTTAAGAACTTTTTCAAG
GGCACTTCAAGGGCGCTGAACAGGCCTGACACAGGGCACTCAGGTCAGGC
TGGGGATAGAGGGAGGGAGTGGAATTTGTATCTCTCATAATGGCTAACAA
CAAAAATTCAGGTGACAACAGATGCTGGCGAGGATGTGAATAACGAGGAA
CTTTTTACCACTGTTGGTGTAACTGCATGCTTGTGCGACCTCTTGCAAAT
CACCTTGAGCGATCCGCTTTTTTTTTTTACAAGACTACCGGAGCATCCCC
GAAATACTTTCTTTGCCCCTATTTCTCCAAGATGTCCCTTCTCGTTATTA
TATGAATATGTCTCCCCCACGCTCCTATTTCCCTTTTATTTATTCACCCT
ACCCCCCTGCTTTTTCCCCCATTATTTCTCTCTCCTTTTACCACTTGCTT
TTTAATTCCTCCGGCGATTTTTTTTTTCTCCGCCAGTTCTTCTTTTCTCT
ACTTTCTTCCTCACTATCCTCACCACTCTTTTTTCTCCCATTTTTTTTCT
TCTTCTTTTCCCCCCCCCCTCTTCTTCCCTTCCCCCCCATTTTTTCCCCC
CACTCTCCTTTTCACCCTTACTCTCCTCTTTTCCCTCTCCCCCCCTTTTT
TTTCTTTTTCCCTGTCTTTCCCTTTTCCCTTTTTTCTCACCCCTCTACTT
TTTCCCTCTTTTTCTCCTTTTTTTTTTTTTCTTCCCCCTTTTTTTTTGTT
TTTTCCCTCCTTTCCTACCCCT
TTCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAATTCTGTCAGGTCCT
TTGCCACAGCAATAAGAAAGGAAACACAGGCAGACGGCAGACATGCGAGC
CTGTGAGGTAGGTTCCTAACTTTCATCCCTGTTAGCGCAAACGCCACTGT
GTTAGGTCAACTCAGTTCCAAATGAAGCTTAGAGCAAATCCCGCATGAAT
TAGGGCGTCGGGCTGGACTGCAAAGCTCCCTGGAGGAGCATGGGCTAAGG
CATGGGCAAGTAGACGCAGCGATGATCTGAGGATGAGGGGCCACGGGAAA
GAAGAGAACCCTGAGCGTGGCTGGGTAGGACAAGGAGCTGATTTAGAAGT
GGGGTGTGTGGGAGGNNNNNNNNNNNNNNTTNTNNTNNTNNTTNNNTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
TNTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTNNTTTTTNTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTNTCTTTTTCTTTTTTTTCCTNTT
TTTTTTTTTCTTTTTTTTTTTTTTTCTCCTCCTTTTCTTTCTTCCCTTTC
TCCTTCTCTTTCCTCTTTCTTTTTTTTCCCTTCTTCTTCCCTTCTCTTCT
TCTTTCCTCTCTCTTCTCTTTTTCTCTCCCCCCCCCTTCTCTCTTTTCTT
CCCTTTTCTTTTTCCCCTCCCTCCTCCTCCTCCCTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_f05.g1 MSMg01no442_f05.g1 CHROMAT_FILE:
MSMg01no442_f05.g1 PHD_FILE: MSMg01no442_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:26 2005
         (338 letters)



>mm_chr10_118241980_118242717
          Length = 738

 Score =  623 bits (322), Expect = 0.0
 Identities = 331/334 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttaattctgtcaggtcctttgccacagcaataagaaaggaaacacaggcagacggcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cttaattctgtcaggtcctttgccacagcaataagaaaggaaacacaggcagacggcaga 519

                                                                       
Query: 61  catgcgagcctgtgaggtaggttcctaactttcatccctgttagcgcaaacgccactgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 catgcgagcctgtgaggtaggttcctaactttcatccctgttagcgcaaacgccactgtg 459

                                                                       
Query: 121 ttaggtcaactcagttccaaatgaagcttagagcaaatcccgcatgaattagggcgtcgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 458 ttaggtcaactcagttccaaatgaagcttagagcaaatcccgcatgaattagggcatcag 399

                                                                       
Query: 181 gctggactgcaaagctccctggaggagcatgggctaaggcatgggcaagtagacgcagcg 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 398 gctggactgcaaagctccctggaggagcatgggctaagtcatgggcaagtagacgcagcg 339

                                                                       
Query: 241 atgatctgaggatgaggggccacgggaaagaagagaaccctgagcgtggctgggtaggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 atgatctgaggatgaggggccacgggaaagaagagaaccctgagcgtggctgggtaggac 279

                                             
Query: 301 aaggagctgatttagaagtggggtgtgtgggagg 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 278 aaggagctgatttagaagtggggtgtgtgggagg 245


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)