BAC Information

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BAC

Clone NameMSMg01-443G22
Chromosome10 (Build37)
Map Location 57,678,459 - 57,678,912
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a
Downstream geneEG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099, Sh3md4, Sept10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443G22.T7 (MSMg01no443_g22.b1)MSMg01-443G22.TJ (MSMg01no443_g22.g1)
ACCAG532840AG532841
length755722
length of high quality
(start - end)
459 (49 - 507)426 (80 - 505)
definitionCHROMAT_FILE: MSMg01no443_g22.b1 PHD_FILE: MSMg01no443_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:02 2005CHROMAT_FILE: MSMg01no443_g22.g1 PHD_FILE: MSMg01no443_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTCCTTTGTTCTGGATTAGCCATATATTTATGTTCACACCA
ATGAGAAAATTACAAAATAGAAGAGCTGGTAATGAGAAATGGTGACATTC
TTTTGACTACCTGTATTATAGGTGATTGGTTTGGACCAATGAATGGAGAA
GAACACAATGATATGGACAGAAGTCTCCTATGGCAGGGCTGCACTACTTT
ATAATGATGACAGTAGAATCCTGTATAATTCAAGGTGGGAAATTTAGATA
TTATTGGATCATTTCTGTTATATTCTCTTGGGAAACAAAGTCTGACTACT
TTCTTTTCATGTCCTGATATATGAACTGGGGCTGAATTCAATATTCAGTC
ATGGCCAATTTTAAGTCTATGTGCTTTGTAGGCAACCAAGAACTACTAAA
ACATTTAGGAGGAGGAAAAGACAGGCAATGCATAATATGAATTATTTGCT
ATCATTCTTCCAAATGTCTCCCTGTGATGTCATCACAAGCAACCAATGAA
TCATTGCTTGACAGAGTTAATTTTCCTCAATTTCCTGTACACAACCAGCG
TCCTGGTGATTTTTCTAATAGCTGTGACCAAATTCTCAAAGCAGAAACCC
CTCCTGGCAATAATAATTTTGTTTTTTTCCCCTGCCTCCTTAGAATCACC
AAAATCCCTGGCGTTATTTAACATCGCCCTCTTTTTTATAATTCTCCACT
AAAAG
NTTTACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGTGGCCAGGACAGCATGC
AATATGCATGGTCATAAATTTTTTTTGGAGGGAGAAGTATCCAGAGGTGT
GATTATTCACTGATTGATGAGTAGTAACCAGAGGATTGGCTTGCTTGTCA
GAGACTTGGAAAGAGCATGACTGGGAAATTATTGATTAAGACATAGAGAT
CATAAGTATGTGGATAGATCACTCCAAATCAACAAAGGATATAAAGATAC
TAATGTCCCATGTAAGTATGTGGATAGATATCTCTAAAATGTCAGAGGAT
GTAAAGATAGTTATGGTTCATGCTTAACAAAAGGAAACTTCAGCTAAGGA
ATAATTCAATAATTAATTGGCAATGATGATCACTTCTGTGGGAAGTCAGG
GTTTTTTCTGAACGGCACTTCTCATTTTGCAATGGACCAATAATCAAAGT
TGCCATGCTGGCAGAAATGTGGTTTTTACCTAGGTCTAATAGAGACTTAC
ATGCCCCCATCCTGAACTGTCTACATCTGCTAATGAACGTCCGATCTCTG
AACAGCCGAAATAAACCTCGATCCTTTGTGGTTCCGCTTGGTCTTGGATT
TTTTGCCTTTTCCCCCTTTATCTCGTTGGCGTTTTCTTTGTCTTGCCTTC
CCCGTTTCTTCCTCCTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_g22.b1 MSMg01no443_g22.b1 CHROMAT_FILE:
MSMg01no443_g22.b1 PHD_FILE: MSMg01no443_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:02 2005
         (459 letters)



>mm_chr10_57678455_57679313
          Length = 859

 Score =  828 bits (428), Expect = 0.0
 Identities = 449/456 (98%), Gaps = 3/456 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttccttt-gttctggattagccatatatttatgttcacaccaatgagaaaatt 63
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gaattctttcctttggtt-tggattagccatatatttatgttcacaccaatgagaaaatt 400

                                                                       
Query: 64  acaaaatagaagagctggtaatgagaaatggtgacattcttttgactacctgtattatag 123
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acaatatagaagagctggtaatgagaaatggtgacattcttttgactacctgtattatag 340

                                                                       
Query: 124 gtgattggtttggaccaatgaatggagaagaacacaatgatatggacagaagtctcctat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gtgattggtttggaccaatgaatggagaagaacacaatgatatggacagaagtctcctat 280

                                                                       
Query: 184 ggcagggctgcactactttataatgatgacagtagaatcctgtataattcaaggtgggaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ggcagggctgcactactttataatgatgacagtagaatcctgtataattcaaggtgggaa 220

                                                                       
Query: 244 atttagatattattggatcatttctgttatattctcttgggaaacaaagtctgactactt 303
           |||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||
Sbjct: 219 atttagatattattggatcatttctgttatattc-caagggaaacaaagtctgactactt 161

                                                                       
Query: 304 tcttttcatgtcctgatatatgaactggggctgaattcaatattcagtcatggccaattt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 tcttttcatgtcctgatatatgaactggggctgaattcaatattcagtcatggccaattt 101

                                                                       
Query: 364 taagtctatgtgctttgtaggcaaccaagaactactaaaacatttaggaggaggaaaaga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 taagtctatgtgctttgtaggcaaccaagaactactaaaacatttaggaggaggaaaaga 41

                                               
Query: 424 caggcaatgcataatatgaattatttgctatcattc 459
           |||||||||||||||||||| |||||||||||||||
Sbjct: 40  caggcaatgcataatatgaactatttgctatcattc 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)