BAC Information

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BAC

Clone NameMSMg01-443M06
Chromosome10 (Build37)
Map Location 25,738,914 - 25,739,034
singlet/doubletsinglet
Overlap geneC030003D03Rik
Upstream geneEG667479, LOC212399, Akap7, LOC665800, Epb4.1l2, 2010003K15Rik, EG667513, LOC667519, LOC628697
Downstream geneLOC100040851, LOC15352, Samd3, L3mbtl3, LOC435208, LOC667572, LOC100040349, Arhgap18, Lama2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443M06.T7 (MSMg01no443_m06.b1)MSMg01-443M06.TJ (MSMg01no443_m06.g1)
ACCAG533093AG533094
length715721
length of high quality
(start - end)
216 (97 - 312)121 (130 - 250)
definitionCHROMAT_FILE: MSMg01no443_m06.b1 PHD_FILE: MSMg01no443_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:28 2005CHROMAT_FILE: MSMg01no443_m06.g1 PHD_FILE: MSMg01no443_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAAAATAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTACANCAGAAGG
CGCNGGAANCACTCAATTACTAGAAATGCAGGACGANNNTNNNGNATATT
TAGAATTGGGAAATTATAATTTTAACTTCAAAAACATTTACATTATCCCC
AAAGCAGAAACTGCATGTGTTAGCAGTCTTTCCCTCTTTCTCTCTATCCA
TAATCTCCTCATCTCTCTAAGAAACTTCTAATTGACCTTCTTTGTCTTTG
GTCTTATATATTCTGGGAAAAGCCATACAGCAGATGTAGAATACACCATC
CTTTGTTCTCGGCCTCTTGATGATCCTTAGAGGAACGGCTTCCAGGCCCA
ACCACACTATATTATTATGCATTGTTTCAGTCTTTTCTATGAACACACAA
TGCCCTGCTTGCTTCTTACCACCTCTTGATATACATTTGGGTTGCTTCTT
CCCCCTGGTCACTGTATATAATGCCGCTATAAATATGCACACACTTTTAA
TGTATACAAGCTCTCATTTATTTACCTTGTTCATATAATCTAGTTTGGAG
CACTATGGTTAACAATGTAATTCTGCGTTCAACCTTTCGAGGAACTGCTA
TATAGTTCATTAAAGCAGCTGAGACGATTCTAGCTCTCGTAATATTGGAT
TTTTTTTCTGGTTTCTCAAACATGCTTTCTTGTTTAACTTTCCACCTATT
TCCCATTAATACTCC
TTCCAGGATGACATGTGAGGCCTGGGGGNGGCCTGGTTTCGAACCAGGGG
NGANNNNANAGAAGTAACCAAAAAACGCAGNGCACCNNGNGGNAANNGAA
AAGGGAAANCAAAAGGAACTTTCCCGCGGACAGGATCTTCTTAGCCAAGT
GATCACAGCAAGCATCGTTATTCTGGTGAATTAATTATTTACCAAACAAC
CCGAAGACACAGCACCACACTGATGATGGTCTTGCCAGACTGAATCTGAG
ATTTTTTGGCATCCAAGATGCTCATTCCACGAGACACTCTATAAAGAAGT
CATTTAGGTTTGAGGAGTTTAGTTGTTTAAGCATTCCAGAACCAGGGAAA
GCCAACAGAAATGATCGTTCCCCAGCTCTAGGCTGAGTGTTTTCATTACA
AGTTACTTTTGTAGTGGGAAAACCAGAAAACTCAAGTGGAGTGGAGGATT
ACATGACAGCAAAGCCCCAGTGCGAGTGGTTTGAACCTAATGGCTATATT
TTAGTCCAGAACATTTCTTTGCTAGAAACCTAAGGGCAAGCCCCCTTCAA
GTTACTTCTCACTGGTTGTGACAACGAATTCTTACCATATCCGCAAAGAC
TCTGGAATAATGTCCCTCCCCCATTAAAACTGTTTAAATAAGCGCCTATT
TATTTTTCTCTTTCCTTTCCCCCCCCCGGTGTCCAACCTCCCGACCCCCG
AATCTACCTCCCTTTGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_m06.g1 MSMg01no443_m06.g1 CHROMAT_FILE:
MSMg01no443_m06.g1 PHD_FILE: MSMg01no443_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:28 2005
         (121 letters)



>mm_chr10_25738714_25739234
          Length = 521

 Score =  234 bits (121), Expect = 1e-66
 Identities = 121/121 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaggatcttcttagccaagtgatcacagcaagcatcgttattctggtgaattaattatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaggatcttcttagccaagtgatcacagcaagcatcgttattctggtgaattaattatt 260

                                                                       
Query: 61  taccaaacaacccgaagacacagcaccacactgatgatggtcttgccagactgaatctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taccaaacaacccgaagacacagcaccacactgatgatggtcttgccagactgaatctga 320

            
Query: 121 g 121
           |
Sbjct: 321 g 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 521
Length adjustment: 8
Effective length of query: 113
Effective length of database: 513
Effective search space:    57969
Effective search space used:    57969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)