BAC Information

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BAC

Clone NameMSMg01-444A10
Chromosome10 (Build37)
Map Location 3,888,119 - 3,888,569
singlet/doubletsinglet
Overlap genenone
Upstream geneCnksr3, Oprm1, A130090K04Rik, LOC237252
Downstream geneLOC100041224, Rgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1, Syne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444A10.T7 (MSMg01no444_a10.b1)MSMg01-444A10.TJ (MSMg01no444_a10.g1)
ACCAG533291AG533292
length757734
length of high quality
(start - end)
396 (45 - 440)451 (80 - 530)
definitionCHROMAT_FILE: MSMg01no444_a10.b1 PHD_FILE: MSMg01no444_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:48 2005CHROMAT_FILE: MSMg01no444_a10.g1 PHD_FILE: MSMg01no444_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATAAAATTACCAAATTCACACAATACCTTTCCACAAATCCAGCCC
TTCAAAGGATAATGACAGAAAAAAACAATGCAAGGACGGAAACCATGCCC
AAGAAAAAGCAATAAAGTAATCCTTCAACAAACCAAAAAGAAGACAGGCA
CAAGAACAGAATGTCAATTCTAACAACAAAAATAATAGGAAGCAACAATT
ACTTTTCCTTAATATCTCTAAATATCAATGGCCTCAATTCCCCAATAAAA
AGACATAGACTAACAGACTAGTTACACAAACAGGACCCAACATTCTGCTG
CTTTCAGGAAACCCATCTCAGGGAAAAACACAGACACTACCTCAGAATAA
AAGGCTGGAAAGCAATTTTCCAAGCAAATGGACTGAAGAAACAAGTTGGA
GCAGCCATTCTAGTACCTAATAAAGTCGACTTCCACCCCCAAGTTATCTA
AAAAAGACAAGGATGGACCGCTTCATACTCATTATAGGCGAAACCCTCCT
CGAGGATTCTCCCATTTCTGAAAAACCTATTCTCCTCCCGCCCTGGCCGT
TCTATACTTTATAGAAATTCTCAGCAATCCCCTAGCATACCTTGCCCTCC
TCACCCTCATAGCGGTATAACCCCCTCTTATTCCTTTCCTTAATGGGTCA
CACGTTGTTACATTGTACTCACTTCGCGATACCCTTTCACCACATGCAAC
TCCCAAA
TTAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTAATAACCTTTGACAAGA
AACATTTCCTTCTATTTAGTATAAACCATTAATGGCTCAACATGAACAAA
CATTGTTCCTTGACTGTATTTATCTTCATTTGAAGTGATGGCACTATTAG
CCTGAAACTGAAACTAAGTGCCTAATTAAGATGCTTTGGTTTCAAAACAT
GGTCAATGATTTCCATTATAGTCCAAGGAAAGCCAAATCATGAGATTTTT
AATCTTTTGCTTGCCCCCTCTTTTTTGTGGCAAATGATGGAAACAGAAAG
ACTTCTTAGAGATGTTATAATTTAAATATAATTTAATGAGTGTGGCTGGT
CCTTAGCAAATGACATTTAGTGTTGCAGGTGCCCATTGGATACATTATCT
ACTCTGTAATCATAGTGTTGTGTTACTCACTGGAAATGGTTTTAGGGATG
GGAGGGCTCTCATTCCTTATATACTGAGGAAAACATCATACCGGTAATGT
ACTTTCATGAAGCTTTTCCTCTCATTAATTTGCTTGGTTGACATTTCTCT
TTATTGCAAAACGCTTATCATTTAAAAATGTATTCTGATATTTCTAACTC
TGATTTCCCAAATTGCTTAAGACTTGCCCTCTGATTCATCCTCTTTCCCT
TGCACTATTTACTCTTACTTTACCACATTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_a10.g1 MSMg01no444_a10.g1 CHROMAT_FILE:
MSMg01no444_a10.g1 PHD_FILE: MSMg01no444_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:48 2005
         (451 letters)



>mm_chr10_3887919_3888769
          Length = 851

 Score =  799 bits (413), Expect = 0.0
 Identities = 441/457 (96%), Gaps = 12/457 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactaataacctttgacaagaaacatttccttctatttagtataaaccattaatggctca 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 aactaataacctttgacaagaaacatttccttctatttagtagaaaccattaatggctca 260

                                                                       
Query: 61  acatgaacaaacattgttccttgactgtatttatcttcatttgaagtgatggcactatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatgaacaaacattgttccttgactgtatttatcttcatttgaagtgatggcactatta 320

                                                                       
Query: 121 gcctgaaactgaaactaagtgcctaattaagatgctttggtttcaaaacatggtcaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctgaaactgaaactaagtgcctaattaagatgctttggtttcaaaacatggtcaatga 380

                                                                       
Query: 181 tttccattatagtccaaggaaagccaaatcatgagatttttaatcttttgcttgccccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 381 tttccattatagtccaaggaaagccaaatcatgagatttttaatcttttgcttgcccc-- 438

                                                                       
Query: 241 cttttt------tgtggcaaatgatggaaacagaaagacttcttagagatgttataattt 294
               ||      ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ----ttcgacaatgtggcaaatgatggaaacagaaagacttcttagagatgttataattt 494

                                                                       
Query: 295 aaatataatttaatgagtgtggctggtccttagcaaatgacatttagtgttgcaggtgcc 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaatataatttaatgagtgtggctggtccttagcaaatgacatttagtgttgcaggtgcc 554

                                                                       
Query: 355 cattggatacattatctactctgtaatcatagtgttgtgttactcactggaaatggtttt 414
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 555 cattggatacattatctactctgtaatcatagtgttgtgttactcagtggaaatggtttt 614

                                                
Query: 415 agggatgggagggctctcattccttatatactgagga 451
           ||||||||||||| |||||||||||| ||||||||||
Sbjct: 615 agggatgggagggttctcattccttagatactgagga 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)