BAC Information

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BAC

Clone NameMSMg01-445I09
Chromosome10 (Build37)
Map Location 55,567,799 - 55,568,348
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382460, LOC100041927
Downstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445I09.T7 (MSMg01no445_i09.b1)MSMg01-445I09.TJ (MSMg01no445_i09.g1)
ACCAG534434AG534435
length724741
length of high quality
(start - end)
550 (66 - 615)540 (68 - 607)
definitionCHROMAT_FILE: MSMg01no445_i09.b1 PHD_FILE: MSMg01no445_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:45 2005CHROMAT_FILE: MSMg01no445_i09.g1 PHD_FILE: MSMg01no445_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCTTT
GTTTTCCCGAGTTACCAACAGAAGTTTCTAGTCCAGATTTAGAATGAGTC
TTTCTGCTTCCAAAGTCTCTCATTATAGTGCACAGCAGCTTGCTTTTTAG
TTTATTACAGTTGTTGTTGGCTCAACAACAAAGATTAGCCAAATCAGCAT
TTTAGCATGCGCTTTGCTCTGCAGCTGTTCTTCACCCCCATTTGATGCAG
TTGTAGGTGTTTGTTTTGAAATTTGTAACAGTTTTCACTGCTTGATTTAA
TTTTTTGTCTTTTTTCATGAACATCTTTTCTTTCTGGTTTGAGTCTTTCA
TTTTCACTATGTATTCTTGCTTATTTTTAAAGTCTGATATAGAAATTATA
ATATATATATTTAACATCTGGAAGTCTACTTAGAATCAATAATTTACTAC
TTTGAATAAAATGTAGATTTTTACATTGGATAGGTCTCTTCAAACGTCAT
CCATTTATCTCATATGTACATTTTAGTCTCTCCACACCATATACAGTACA
GATATTGAAGTTCTTGTCAAACAGTGCTGTATTTTCTTGTATTTAATTGA
CAAATTGGCATTTAAAAATTAACTACCAGGAATAGATTTACTTTTACTGT
TTAGTTGATTATTTACTGCTGTAAATACCATGGATAAATAAAGTATTATT
GCCTATTGCTTACTTTTGTTCCCC
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCAC
CTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTTCTC
CATTGTTGGTGGGACTGTAGGCTTGTACAACCACTCTGGAAATCAGTCTG
GCGGTTCCTCAGAAACCTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCCTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAACGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
GAACTCACACAATATGTACTCACTGATAAATGGATATTATCCCCAAACCT
AAGATACCCCAGATATTAAAAACAATTTCCCTAAACCCTGGAAATTCANG
AAAAAAGAAGATTGAAGGGGGGACACTAATGCCCCTCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_i09.b1 MSMg01no445_i09.b1 CHROMAT_FILE:
MSMg01no445_i09.b1 PHD_FILE: MSMg01no445_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:45 2005
         (550 letters)



>mm_chr10_55567696_55568645
          Length = 950

 Score = 1040 bits (538), Expect = 0.0
 Identities = 547/550 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacagaagtttctagtccagatttagaatgagtctttctgcttccaaagtctctcatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 caacagaagtttctagtccagatttagaatgagtctttctgcttccaaagtctctcatta 594

                                                                       
Query: 61  tagtgcacagcagcttgctttttagtttattacagttgttgttggctcaacaacaaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tagtgcacagcagcttgctttttagtttattacagttgttgttggctcaacaacaaagat 534

                                                                       
Query: 121 tagccaaatcagcattttagcatgcgctttgctctgcagctgttcttcacccccatttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tagccaaatcagcattttagcatgcgctttgctctgcagctgttcttcacccccatttga 474

                                                                       
Query: 181 tgcagttgtaggtgtttgttttgaaatttgtaacagttttcactgcttgatttaattttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgcagttgtaggtgtttgttttgaaatttgtaacagttttcactgcttgatttaattttt 414

                                                                       
Query: 241 tgtcttttttcatgaacatcttttctttctggtttgagtctttcattttcactatgtatt 300
           |||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgtcatccttcatgaacatcttttctttctggtttgagtctttcattttcactatgtatt 354

                                                                       
Query: 301 cttgcttatttttaaagtctgatatagaaattataatatatatatttaacatctggaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cttgcttatttttaaagtctgatatagaaattataatatatatatttaacatctggaagt 294

                                                                       
Query: 361 ctacttagaatcaataatttactactttgaataaaatgtagatttttacattggataggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctacttagaatcaataatttactactttgaataaaatgtagatttttacattggataggt 234

                                                                       
Query: 421 ctcttcaaacgtcatccatttatctcatatgtacattttagtctctccacaccatataca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ctcttcaaacgtcatccatttatctcatatgtacattttagtctctccacaccatataca 174

                                                                       
Query: 481 gtacagatattgaagttcttgtcaaacagtgctgtattttcttgtatttaattgacaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 gtacagatattgaagttcttgtcaaacagtgctgtattttcttgtatttaattgacaaat 114

                     
Query: 541 tggcatttaa 550
           ||||||||||
Sbjct: 113 tggcatttaa 104


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)