Query= MSMg01no445_m08.b1 MSMg01no445_m08.b1 CHROMAT_FILE:
MSMg01no445_m08.b1 PHD_FILE: MSMg01no445_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:05 2005
(270 letters)
>mm_chr10_52253609_52254278
Length = 670
Score = 489 bits (253), Expect = e-143
Identities = 262/267 (98%), Gaps = 4/267 (1%)
Strand = Plus / Minus
Query: 4 ggaattcacaagtatcaccaacagaccagaaatttttatcaaatgatgctaaacagtttg 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggaattcacaagtatcaacaacagaccagaaatttttatcaaatgatgctaaacagtttg 310
Query: 64 gggcacaatgaatttgcctgttctacatgatttgcataggaacagcgcctcctgctggtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gggcacaatgaatttgcctgttctacatgatttgcataggaacagcgcctcctgctggtg 250
Query: 124 agatcataaaatccaccttcgacattacttctggaaatactgattgttgttttttgtttg 183
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 249 agatcataaaatccaccttcgacattacttctggaaatactgattgttgttt----tttg 194
Query: 184 tttgtttgtttgtttgtttgctctatataaaataaaacagcacttttctattcctgtgta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tttgtttgtttgtttgtttgctctatataaaataaaacagcacttttctattcctgtgta 134
Query: 244 agagtgatgccagtgtctatacaacca 270
|||||||||||||||||||||||||||
Sbjct: 133 agagtgatgccagtgtctatacaacca 107
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no445_m08.g1 MSMg01no445_m08.g1 CHROMAT_FILE:
MSMg01no445_m08.g1 PHD_FILE: MSMg01no445_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:06 2005
(419 letters)
>mm_chr10_52225364_52226182
Length = 819
Score = 244 bits (126), Expect = 9e-69
Identities = 141/146 (96%), Gaps = 2/146 (1%)
Strand = Plus / Plus
Query: 275 cacattttttt-attattctttatctttccccatgtctttccaaagttagttttctctac 333
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cacattttttttattattctttatctttccccatgtctttccaaagttagttttctctac 534
Query: 334 tcaccaccatctccctcaagcttctcaatagatactgactattcactgcctaatcattct 393
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 535 tcaccaccatctcccttaagcttctcaatagatactgactattcactgcctaatcactct 594
Query: 394 tgcctacaccccccttcccccaccca 419
|| |||||||||| ||||||||||||
Sbjct: 595 tgtctacaccccc-ttcccccaccca 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space: 332100
Effective search space used: 332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
