BAC Information

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BAC

Clone NameMSMg01-446G19
Chromosome10 (Build37)
Map Location 4,500,391 - 4,500,821
singlet/doubletsinglet
Overlap geneRgs17
Upstream geneOprm1, LOC237252, LOC100041224
Downstream geneMtrf1l, Fbxo5, LOC666395, Vip, Myct1, Syne1, Esr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446G19.T7 (MSMg01no446_g19.b1)MSMg01-446G19.TJ (MSMg01no446_g19.g1)
ACCAG535123AG535124
length799756
length of high quality
(start - end)
---432 (62 - 493)
definitionCHROMAT_FILE: MSMg01no446_g19.b1 PHD_FILE: MSMg01no446_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:56 2005CHROMAT_FILE: MSMg01no446_g19.g1 PHD_FILE: MSMg01no446_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATCCACTCCCTTGTTCGACCCCCGCGGATTCTCCTCAGGCCACATTT
AAACACTAGAAAAGTTGGCTCGAAACCTAACCAAAGTCAAATATGTTTTC
CTCAGNAGTTTATTTTATTATTTGAGAGAAAGAGAGAGACACAGAGAGAC
ACAGACCGCGTCCGTGCGTGTCCCCCCCCCCCCNCCCCCCCCCTCCCCCC
CCCCCCTCTCCCCCCCCCCCCCCCCCTCTCCCTCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCTTCCCCCCTTTTTTTCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCC
CCCCCCTCCCTCCCCCCCCTCCCCCCCCCCCTCCTCCCCCCCCCCCCCCT
CCCCTCCCCCCCCTCCCCCCNTCTCCCCCCCCCCCCCCCCCCCCCCCTTT
CCCCCCTCCCCCCTCCCCCCCCCTCCCCCCCCCCCCCCCCCTCCCCCCCC
CCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCTCTCCCCCCCCC
CCCCCCCTCCTCCCCCCCCCCTNCCCCCCCCCCCCCCTCCCCTCTTCCCC
TCCCCCTCCCCCCCCTTCCCCCCCCCCCCCTCCCTCCCTCCCCCCCCCCC
CCACTCCTCCCTCCCCCCCCCCCTTCCCCCCCCCCCCCCCCTTTTCCCCC
CCTCCCCCCCTCCCCCCCTTCTCCCCCCCCTCCCCCCCTCTCCCCCCCCC
TTCCCCCCCCCCCCCCCCCCCCCCTCCTTCTCCCCTTCTCCCTCCCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCTCTGTAGACCTGGTTAGTCTTGAACTCACAGAGATCA
GTCTGCTTCTGCCTCCAGTGTTGGGAGTAAAGGTAGGTAGGTAACATTTT
AAGTGAACATTCCTATCTTCCAATCTAAGACACAAAGACAATGACACACA
TCCAGTGTTCACTCTGGGAATCTTGATCAAAGTCTAAACACTTTAGGGAG
GGGAAACATCAACAACTCAGGCTAGAGTTAGCAAAGCAAGTGTGGAGATT
AGAGTCTGTTAATATTTAATAAGGAGGAAAAGTGTTTAGTCCATTCCAGA
GAATAAGGACAGTGGGCGCTGTCTGTGGATGGTGGACTGTTTGTAGAGAA
CACTGTGGATTGTCTCGGGAGAGAAACGTCTGAAGCCAACGATGGGTTTC
CTCACTCATCATCAGAGCCAGTGCACAGTCCACTTGGAAGATGGTTGATT
GTTGTAAGAAAACAATCAGTCCTTAGAAATGTCACTAGAAGAGAGTGGTT
AACAGCTCCAAACCCTTGCCGCACCCTTGGTGCCGTGGGAGCCACCTATT
GACACCTCATGCTCTTATCCTGCGCCGAATCTGTACCCTGTCCCACCTAA
TTTATTTCTTTGTTTCACCCCTCAACGGCCCCTCTCCCTTTGCGTATCTC
CTTCTCCCTTTTTTTTCCACTCCTCTCCTTCTTTTCCCTATTTCATTTTC
TTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_g19.g1 MSMg01no446_g19.g1 CHROMAT_FILE:
MSMg01no446_g19.g1 PHD_FILE: MSMg01no446_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:57 2005
         (432 letters)



>mm_chr10_4500119_4500949
          Length = 831

 Score =  712 bits (368), Expect = 0.0
 Identities = 416/432 (96%), Gaps = 1/432 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctgtagacctggttagtcttgaactcacagagatcagtctgcttctgcctccagtgt 60
           |||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 703 tctctgtagaccaggctagtcttgaactcacagagatcagcctgcttctgcctccagtgt 644

                                                                       
Query: 61  tgggagtaaaggtaggtaggtaacattttaagtgaacattcctatcttccaatctaagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tgggagtaaaggtaggtaggtaacattttaagtgaacattcctatcttccaatctaagac 584

                                                                       
Query: 121 acaaagacaatgacacacatccagtgttcactctgggaatcttgatcaaagtctaaacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 acaaagacaatgacacacatccagtgttcactctgggaatcttgatcaaagtctaaacac 524

                                                                       
Query: 181 tttagggaggggaaacatcaacaactcaggctagagttagcaaagcaagtgtggagatta 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tctagggaggggaaacatcaacaactcaggctagagttagcaaagcaagtgtggagatta 464

                                                                       
Query: 241 gagtctgttaatatttaataaggaggaaaagtgtttagtccattccagagaataaggaca 300
           ||| ||| ||| ||  || | |||||||| |||||||||||||| |||||||||||||||
Sbjct: 463 gagcctggtaagatg-aagagggaggaaatgtgtttagtccatttcagagaataaggaca 405

                                                                       
Query: 301 gtgggcgctgtctgtggatggtggactgtttgtagagaacactgtggattgtctcgggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 404 gtgggcgctgtctgtggatggtggactgtttgtagagaacactgtggattgtctcggaag 345

                                                                       
Query: 361 agaaacgtctgaagccaacgatgggtttcctcactcatcatcagagccagtgcacagtcc 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 344 agaaacgtctgaagccaacgatgggtttcctcactcattatcagagccagtacacagtcc 285

                       
Query: 421 acttggaagatg 432
           ||||||||||||
Sbjct: 284 acttggaagatg 273


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 831
Length adjustment: 9
Effective length of query: 423
Effective length of database: 822
Effective search space:   347706
Effective search space used:   347706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)