BAC Information

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BAC

Clone NameMSMg01-449E15
Chromosome10 (Build37)
Map Location 96,228,525 - 96,228,671
singlet/doubletsinglet
Overlap genenone
Upstream geneEea1, EG432491, LOC667380, Btg1
Downstream geneLOC628256, 4930556N09Rik, EG667407, Dcn, Lum, Kera, Epyc, 4921510H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449E15.T7 (MSMg01no449_e15.b1)MSMg01-449E15.TJ (MSMg01no449_e15.g1)
ACCAG537298AG537299
length720690
length of high quality
(start - end)
150 (69 - 218)---
definitionCHROMAT_FILE: MSMg01no449_e15.b1 PHD_FILE: MSMg01no449_e15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:52 2005CHROMAT_FILE: MSMg01no449_e15.g1 PHD_FILE: MSMg01no449_e15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCTTATTCNNNNNNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCGCGGAATTCTTCTTTTTCACGGACATGTAAA
TTATGAATTTGACTTTTAATGAAAGGCATTTTAATATTTTATTTCTTAGT
CTGGCAAGAAGTAATAACTTCAAGATGGGAAGTAGGTACCTGTCCCTCTT
CACTCAGCCATGGTAGACACTGTTCATTACGCCTGTCACTGATCTGGCGC
TCTGGTCTTGGTCTCAGAATGCTTTACTATATTGTACTTTANATGGCAAC
TGCCAAGTGGTTGCTATCTCTGGAGAAATGGAAGCAAAAAGTTTTGTTTA
TTTTATTAGGGCTAGAAACAACCAAAAGCCGGCAGCTTTGGTAGGGAAAT
GGAAACCTTTAAAAGAAAAATGGGCTTAAGGAAAAAAAAGGGGGGGACTT
TTGGAACCCTTTGAAGGGGGGCAAAAAAACAGCCCTTAAAAAAGGGGTTT
TTAAAACCCGGGGAAACCCCTGTGTCCCCCCAAATTTTTTTGGGGGGGTT
TTTTAAAAAAAATAAAGGGAGCCCCACAATTTTTTTTTTTGGAAATATGT
CGGACAAATATTCTCCCCCCAAACCTTTCCCTTTTCCCACACTTTCCCCT
TCTTCTTTTATCCTATATCCTCATCCCTATAACCCTTTCTACTATTTCCC
TAACTTTATTATTTCTTTCT
NAATAAGGGNCNNNNNCCGATGATATGGGTGGCCTGGNGGNCGCCTGGTT
TCCCCACTTGGAGGNGACACTATANGAAGTTTTCGACGAAAATTCGAAAC
AATTTTAATTGGAAAGAAGGAGGGGCTTCCAGTAAATGTAAAAAAGGTTC
CCTGTGGTTACACCGGGAGGGAAAAAAAAGGGGTTTGGGAATTTCCCCCC
AAAAAAAACCCCCTGGGTGGGGCCAAAAAAAAATTGGTGGGGGGGGGGGG
TTCTTCNTCCTCCCTCAATCCTCTTCTCCAGCGAGGACGGNTTTTGTTTC
GTGCATTTTTAGGGAGCGCGTGGGTAGAATGAAAAAGGAGGTTTTTTTTT
TNTTTTTTTTTTTTTTTTTTCCCCCCTCCGGGGGGGGGCGAAAAAAAAAA
ATTTTCCCGGGGGGGGTTTTTTTTCTTATAAAAAAAAACCAAGGGGGGGG
GGGAAAAAGGTTTTTTTTTTTTCTCCCGGGGGGAAAAAAAAAAAAAAAAT
TTTCTCTTCGCTCGCGCAGAAGGATATCCACCCCCCCCCACCCACCCAAA
AAAAATGAGGGGGGGGGGGGGGGGGGGGGGCTTTTTTCCCTCCCTTTTTA
GAAAAAACAAAACCCCAGGAAAGAGGAAGAGGGAGCGAGAAAAAGAAAAA
AANAAAAAATTTTTTTTTTTTTTCCCCCCCCCCCCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_e15.b1 MSMg01no449_e15.b1 CHROMAT_FILE:
MSMg01no449_e15.b1 PHD_FILE: MSMg01no449_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:52 2005
         (150 letters)



>mm_chr10_96228322_96228871
          Length = 550

 Score =  261 bits (135), Expect = 1e-74
 Identities = 144/147 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttctttttcacggacatgtaaattatgaatttgacttttaatgaaaggcattt 63
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcttttagacggacatgtaaattatgaatttgacttttaatgaaaggcattt 263

                                                                       
Query: 64  taatattttatttcttagtctggcaagaagtaataacttcaagatgggaagtaggtacct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taatattttatttcttagtctggcaagaagtaataacttcaagatgggaagtaggtacct 323

                                      
Query: 124 gtccctcttcactcagccatggtagac 150
           || ||||||||||||||||||||||||
Sbjct: 324 gtgcctcttcactcagccatggtagac 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 550
Length adjustment: 8
Effective length of query: 142
Effective length of database: 542
Effective search space:    76964
Effective search space used:    76964
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)