BAC Information

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BAC

Clone NameMSMg01-449F02
Chromosome10 (Build37)
Map Location 11,866,655 - 11,867,204
singlet/doubletsinglet
Overlap genenone
Upstream geneShprh, Fbxo30, Epm2a, EG666732, LOC100039343
Downstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449F02.T7 (MSMg01no449_f02.b1)MSMg01-449F02.TJ (MSMg01no449_f02.g1)
ACCAG537320AG537321
length777748
length of high quality
(start - end)
255 (53 - 307)550 (82 - 631)
definitionCHROMAT_FILE: MSMg01no449_f02.b1 PHD_FILE: MSMg01no449_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:54 2005CHROMAT_FILE: MSMg01no449_f02.g1 PHD_FILE: MSMg01no449_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GCCGCGGAATTCCACAGTACTCTCTCAAATCTTCTGTCTCTTACTGTTCT
GTCTCCTTCTTGTGCAGTGTTCCCTGAGCCTTGGTGGGAGTGAAGATAAT
ACACCTATCCCACTTAGGGCTGTACAACTTCGTCTGTGATTTTCAGCACT
TTGACTAGCTGCATGCCTCAGCCTTGACTACTATCAACTGGCAAACAAAA
GCTTCTTTGATCAGAGTTGAAAGCAGCCCAAGTATATAGGTATAAGCACA
GATACTTAGAATATGACAACCNNTNGGGGGTAAAATTCCCCCCCCCCATC
TGCACTCCCTATGGACGGCTCATGCTCTTTCCCTTTATTTCCCTTTAACT
GTATCCTATTCTCCTTTTTCTCCCCTTTTCCTCTCCTTTTTTCTCTTTTT
TTCTACTTTCTTCCTTTCTTCTCCCTTTTTTTTTTTCCTTTTTCTTTCTA
CTTTCCCTTTTGCGATGTTCTCTATTTCCTCGCCACCTTCGCGTCTCTTT
TTTATTCTCTCTTTTTTTCCCATTATTTATTCTCCTTTACACTCCCCCTA
TTATATCTACTACTATTTTCTCCCATTGTATTTTTTCTTTCTCTTTTTCT
CTCATATTTGTTCTGATAGTCTAATTACACTTCCCTTATTATCTTATCTT
ACCCCCTTCTCTCTTCACTTCCCCTGTTACTCGCCTCGCTTATTCTCTCG
CCCCTGTGCACCCATACATATATCCTG
NNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGCCCATCAACAATGCC
TGCAACGATGAGATAATCGTCACTATGAGCGCTCAGGGACAAAGAGGATG
AATCACTGAGCAGAGTATTGTCACTAATAATAAGCGCTGGGAATAAGGCA
ATGCGTTTTTCATCATTACGCTATGGCATATATCGTGGGTTTACTTGCAG
AGTTGCAATTGATGACCACATAAAACTCAAGAGAGTTGACAGAAGTAATA
AAATGTTTGTGAGTTAATGTATTGCAAAAGTCTTGTTAAGCAGCCTTTAC
TAATTGCTCTACAGTGAGTCCTGCATCTTTGGTTAGTGGATAACTGATGC
AATGATGTAATACTGCCGCTAGCTCTCTGTGCATTCTGCATCTGTACTTT
CAACCATTAGTGGATCCAAAATGGCTTCAAGGATACAACTGTGTATGAAA
GGAACACATAACTCCCTAAACAATAGAGTAGAATCACTCATAAATGTTTA
TGTTGCAGTAGAAGTAATGCATAGATGACCTGAAATATATGGAAGGATAT
GTGCGAGTTACATGCAAATGTTATGCCATTTAACATAAGGGATTTAAACA
TCTACAGATTTTGGTTCCCACTGGAACAAACGATGAGGGAGATATCCATT
GCGGTGTAATGAGTGCGGTAAGGGGATGAGTGTCTATCTACTCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_f02.g1 MSMg01no449_f02.g1 CHROMAT_FILE:
MSMg01no449_f02.g1 PHD_FILE: MSMg01no449_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:54 2005
         (550 letters)



>mm_chr10_11866580_11867529
          Length = 950

 Score = 1025 bits (530), Expect = 0.0
 Identities = 545/550 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgcccatcaacaatgcctgcaacgatgagataatcgtcactatgagcgctcagggaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catgcccatcaacaatgcctgcaacgatgagataatcgtcactatgagcgctcagggaca 566

                                                                       
Query: 61  aagaggatgaatcactgagcagagtattgtcactaataataagcgctgggaataaggcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagaggatgaatcactgagcagagtattgtcactaataataagcgctgggaataaggcaa 506

                                                                       
Query: 121 tgcgtttttcatcattacgctatggcatatatcgtgggtttacttgcagagttgcaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcgtttttcatcattacgctatggcatatatcgtgggtttacttgcagagttgcaattg 446

                                                                       
Query: 181 atgaccacataaaactcaagagagttgacagaagtaataaaatgtttgtgagttaatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgaccacataaaactcaagagagttgacagaagtaataaaatgtttgtgagttaatgta 386

                                                                       
Query: 241 ttgcaaaagtcttgttaagcagcctttactaattgctctacagtgagtcctgcatctttg 300
           ||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgcaaaagccttgagaagcagcctttactaattgctctacagtgagtcctgcatctttg 326

                                                                       
Query: 301 gttagtggataactgatgcaatgatgtaatactgccgctagctctctgtgcattctgcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttagtggataactgatgcaatgatgtaatactgccgctagctctctgtgcattctgcat 266

                                                                       
Query: 361 ctgtactttcaaccattagtggatccaaaatggcttcaaggatacaactgtgtatgaaag 420
           |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 ctgtactttcaagcattagtggatccaaaatggcttaaaggatacaactgtgtatgaaag 206

                                                                       
Query: 421 gaacacataactccctaaacaatagagtagaatcactcataaatgtttatgttgcagtag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaacacataactccctaaacaatagagtagaatcactcataaatgtttatgttgcagtag 146

                                                                       
Query: 481 aagtaatgcatagatgacctgaaatatatggaaggatatgtgcgagttacatgcaaatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 aagtaatgcatagatgacctgaaatatatggaaggatatgtgcgagttacatgcaaatgt 86

                     
Query: 541 tatgccattt 550
           ||||||||||
Sbjct: 85  tatgccattt 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)