BAC Information

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BAC

Clone NameMSMg01-450A15
Chromosome10 (Build37)
Map Location 86,676,903 - 86,677,426
singlet/doubletsinglet
Overlap genenone
Upstream geneSyn3, Timp3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2
Downstream gene1700113H08Rik, Ascl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450A15.T7 (MSMg01no450_a15.b1)MSMg01-450A15.TJ (MSMg01no450_a15.g1)
ACCAG537865AG537866
length757748
length of high quality
(start - end)
525 (125 - 649)58 (258 - 315)
definitionCHROMAT_FILE: MSMg01no450_a15.b1 PHD_FILE: MSMg01no450_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:49 2005CHROMAT_FILE: MSMg01no450_a15.g1 PHD_FILE: MSMg01no450_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAAGAGGACCG
NGGAANTCATCTTACCTGAATCTTAGNTGGATTCATGAATAAATGATTCT
GATGAATAAAAGCGAGGGGGAACATGAGAGGGAAGCCATCACAAGGAGCC
AGAATCAATTAAAAGAGGAATTCAGGCTACCTCCAACCTCAGCCTTTGTT
TATGGTATCACCAGAGACCTGTGTAGATATTATTTTGAAATTTAGAGCTT
CAACTTGTATGAACATGAATCCACATGCTGAGATCTCGCATGCCTCCGTG
AAATGGCAAAAAAGATATTTAATTGACCCTATTCTTGAATTAAAGCAACA
CACTGTGGAAGGCCTGAATATAAACCATCTATGCTTGATTAATTAGGTTT
GTAAGCATTGTTTCAGAACCAAACAATATTTCTAAAGATTTCAATAGTTC
AAAGATTGCCCTATGGCCGTCTGGCCAATACATCTTCCAACACATGCAGT
TTACAAGCATTTTTCTTCCCAATATGTTGTCTTTGGATGGTGCGACATTG
TTTGAGTGCAGGGCTATTTGGGTCATGGTGGTTTTCTCCTCTGCACAGCA
GTGGTGCTGAGCACAGCACTTTGACCATACATCTTCCATGTCATTTCCAT
CATAGGCACATGACACTTCCTGGNGACCAATCAGGAGTGGTCCAGCATCC
TAACAGAGGGCATATTGGCAAGCCAAGCTTTCTTATTGACAGCCATTGTT
TGGGCCC
NACGGAAGATAGTGGTAGGCCTGGGGGGCGGCCTGTTCAACAACATGTAG
GGACCTATAGAATTTGCGGCGGAATTCTTTGNNCAGTCCTGAGCCCCATT
TTTTAAGGGGGTTGTTTGATTTTCTGAAGACCACCTTCTTGAGTTCTTTA
TATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGCAAAGATCCT
TTCCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAAGGGG
GATTAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACTTTGTGTTTCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCCAATGGATGGACCTGGAGGGCATCATCC
TGATCGAGTTAACACTTTTCCATAGGATCTCACACATTATGCACTCACTG
ATTAGTGCATATCATCCCTTATCCTAGGACACTCTTTCACATTACATACT
ATTTCTTAACTTCATGATTCTCTCGAATAATGATTACTGACTTGTGTTCC
CTATGCCCCTCCTTATATGTGTCACCTAACCACTCTTCCTAATGTAGTTC
TCGATCATTTTGTTTTGCATCTTGCTATTACCCGGTTCTTCCTCTGTCTT
TTCCCTTTTCTCTTCCCCTGCTCTTTTTCCCTTTATTTCCTCCATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_a15.b1 MSMg01no450_a15.b1 CHROMAT_FILE:
MSMg01no450_a15.b1 PHD_FILE: MSMg01no450_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:49 2005
         (525 letters)



>mm_chr10_86676703_86677626
          Length = 924

 Score =  969 bits (501), Expect = 0.0
 Identities = 519/525 (98%), Gaps = 1/525 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagagggaagccatcacaaggagccagaatcaattaaaagaggaattcaggctacctcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 724 tgagagggaagccatcacaaggagccagaatcaattaaaagaggaattcaagctacctcc 665

                                                                       
Query: 61  aacctcagcctttgtttatggtatcaccagagacctgtgtagatattattttgaaattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aacctcagcctttgtttatggtatcaccagagacctgtgtagatattattttgaaattta 605

                                                                       
Query: 121 gagcttcaacttgtatgaacatgaatccacatgctgagatctcgcatgcctccgtgaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gagcttcaacttgtatgaacatgaatccacatgctgagatctcgcatgcctccgtgaaat 545

                                                                       
Query: 181 ggcaaaaaagatatttaattgaccctattcttgaattaaagcaacacactgtggaaggcc 240
           ||||||||||| | | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ggcaaaaaaga-actcaactgaccctattcttgaattaaagcaacacactgtggaaggcc 486

                                                                       
Query: 241 tgaatataaaccatctatgcttgattaattaggtttgtaagcattgtttcagaaccaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgaatataaaccatctatgcttgattaattaggtttgtaagcattgtttcagaaccaaac 426

                                                                       
Query: 301 aatatttctaaagatttcaatagttcaaagattgccctatggccgtctggccaatacatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aatatttctaaagatttcaatagttcaaagattgccctatggccgtctggccaatacatc 366

                                                                       
Query: 361 ttccaacacatgcagtttacaagcatttttcttcccaatatgttgtctttggatggtgcg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 365 ttccaacacatgcagtttacaagcatttttcttcccaatatgttgtctttggttggtgcg 306

                                                                       
Query: 421 acattgtttgagtgcagggctatttgggtcatggtggttttctcctctgcacagcagtgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 acattgtttgagtgcagggctatttgggtcatggtggttttctcctctgcacagcagtgg 246

                                                        
Query: 481 tgctgagcacagcactttgaccatacatcttccatgtcatttcca 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tgctgagcacagcactttgaccatacatcttccatgtcatttcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 924
Length adjustment: 10
Effective length of query: 515
Effective length of database: 914
Effective search space:   470710
Effective search space used:   470710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)