BAC Information

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BAC

Clone NameMSMg01-450H01
Chromosome10 (Build37)
Map Location 104,027,682 - 104,028,013
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450H01.T7 (MSMg01no450_h01.b1)MSMg01-450H01.TJ (MSMg01no450_h01.g1)
ACCAG538170AG538171
length745743
length of high quality
(start - end)
477 (49 - 525)561 (83 - 643)
definitionCHROMAT_FILE: MSMg01no450_h01.b1 PHD_FILE: MSMg01no450_h01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:22 2005CHROMAT_FILE: MSMg01no450_h01.g1 PHD_FILE: MSMg01no450_h01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAATGATTACCTTGTAAAATTAACAGCTTTACAACTTTTTTA
TTTGTAAACATTTATTGTATATACAAATATTTATTCTGTTTACATATATT
CTGAGGGAATATAACAGACATGAATGATATTTCATTTCACAGCAGACTTT
CATGACTCACTTCATTTATTTCCCTATTACACATTCAAATATTTTCCTTA
GAAAATTTTGTTCTGAATATTTGTCTAATTTTTACTGATGCTACAATTTT
TCCTACTTGTCAAATGACTGGTGTTTCTAATGTGCTGTTTTCTCCAGCCA
CAAATTTGTACATGTCCTCTGCTAGTCCTTCAGGGCCTTCTCCTCATGAC
TTATCTTCTGATGTGCAAAAGCTTTTTCAGTTGCCATTGTTGATTTCTGT
TCTTAATGATGTGTTCAAAAAAAATCATTGCTAAAGCAAGTATAAAGCAA
TTCTTTATATAGGTTTTATTCTAAGAATGTCAGAATCTCAAGAATCTTTT
CTTTATTGTGTCTTTCTTCTAGTATCATTATACTTGGCTCAGCTGTTTCA
GATACACACACATATTCACACACACACACTCGTACACACTTCTTTTATGT
ATTATTGTACATCAATAATTGCCCTCGGCATCCATACCCTCGTGTTTCAT
TACTTTGTACCTTGAGGTGTGCGAACATTATCCTCTTCCTATACC
ATTTTCCGAATACTTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGATCAGCAACATTAG
TGTCAGTATAGATTCTGAAAAAGATACCAGCTCACAACTGGTACATTGGG
AGACACATTTAGACAATGTACTGCCATGTTGTATGTGCAATTCCAGCACC
AATGCCAACCTCCATAGAGGAATTTTAGTCCAAGAACATGGCTGCTCTGG
CAAGCGATTGTATGCAAAGACCTAAATCTATAGATCTGGCCAGAATGCAG
ACACTTCCTGGATCACAGTACTTTCTAGCTGGAATACAAACACACCTTCA
GTAGACAGGTTTAATCCCTAAAAAGGACAATAAGGTTATTTTGTAGAGGG
AAGCAGCCATATTTTGGAACTAAGATGAAAGGATGGACCATCTAGGACTA
CACCACCCTGGGATCCATCCCATAATCAGCCACCAAACGCAGACACTATT
GCATATGTCAGCAAGATTTTGCTGACAGGACCCTGATATAGCTGTCTCTT
GTGAGGCTATGCCAGTGCCTGGCAAATATAGAAGTTGGATAGAACACAGG
GCCCCCAATGGATGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGATCTG
CAACCCTATAGGTGGAACAACAATATGAACTAATCGGTACCCTCAGAGCT
CGTGCCTCTACCTGCATATGTAACAGAAAACGGCCTACTCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_h01.g1 MSMg01no450_h01.g1 CHROMAT_FILE:
MSMg01no450_h01.g1 PHD_FILE: MSMg01no450_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:22 2005
         (561 letters)



>mm_chr10_104027682_104028642
          Length = 961

 Score =  611 bits (316), Expect = e-179
 Identities = 328/332 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgatcagcaacattagtgtcagtatagattctgaaaaagataccagctcacaactggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 actgatcagcaacattagtgtcagtatagattctgaaaaagataccagctcacaactggt 273

                                                                       
Query: 61  acattgggagacacatttagacaatgtactgccatgttgtatgtgcaattccagcaccaa 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 272 acattgggagacacatttagacaatgtactgtcatgttgtatgtgcaattccagcaccaa 213

                                                                       
Query: 121 tgccaacctccatagaggaattttagtccaagaacatggctgctctggcaagcgattgta 180
           |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 212 tgccaatctccatagaggaattttagtccaagaacatggctgctctggccagcgattgta 153

                                                                       
Query: 181 tgcaaagacctaaatctatagatctggccagaatgcagacacttcctggatcacagtact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tgcaaagacctaaatctatagatctggccagaatgcagacacttcctggatcacagtact 93

                                                                       
Query: 241 ttctagctggaatacaaacacaccttcagtagacaggtttaatccctaaaaaggacaata 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 92  ttctagctggaatacaaacacaccttcagtacacaggtttaatccctaaaaaggacaata 33

                                           
Query: 301 aggttattttgtagagggaagcagccatattt 332
           ||||||||||||||||||||||||||||||||
Sbjct: 32  aggttattttgtagagggaagcagccatattt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)