BAC Information

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BAC

Clone NameMSMg01-450J09
Chromosome10 (Build37)
Map Location 110,739,200 - 110,739,320
singlet/doubletsinglet
Overlap geneBbs10
Upstream geneLOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8
Downstream geneNap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450J09.T7 (MSMg01no450_j09.b1)MSMg01-450J09.TJ (MSMg01no450_j09.g1)
ACCAG538279AG538280
length758765
length of high quality
(start - end)
118 (201 - 318)378 (79 - 456)
definitionCHROMAT_FILE: MSMg01no450_j09.b1 PHD_FILE: MSMg01no450_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:34 2005CHROMAT_FILE: MSMg01no450_j09.g1 PHD_FILE: MSMg01no450_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACTAAATATTTGCGGCCGGAAAAGGAATCACAATCAGTATCGGATCCGN
GGAANNCACCTTTTACAATAATAAGTTAATGCCAGAAAAGACGGGGAATT
TGTTCCTTTCGTTTTCTCCTGCCCTCCTAAGTCTTGTAAGGATTCTGTAC
AGTTGCTAGTTGTTCTTTGTTTCAGTGCTTGCCAGATTTCAGTATCAACA
AATAATTTGACAGTTATCTCTAGTGTAGATCACAAGTGCTTCCCTGTCAC
TTTATTGTGTGTGTAGTCATAAATAAGGACAGGGTCTTCTTTTAGCAACT
GTAACACCCAAAATAATGTTCTGCTTACACCAGCTTTTAAATGTGCTTGT
TAAGTAACAGTGTTATCTCAACCCATGTCCCTAAATACATGCTCCTAGTT
TATTCATTCAATAAACAACTACTATGCTGTACAGTGACTCTGATATGCTC
TTGTGCACTTTCTACAAAGTTAATAGCTAGTTTGATGACTTCTGACTGGA
TTTACGAAAAGCAAATCTAAAACCTCTTTATATCCTGAAAGCCTTCTGAT
GAATACTGCCCGTATACCCTGCCCTGCCTTACCTCTGTTAAAGGCTTCTG
TTGCAGATTCATGACTATTCTGTTTTTGACCCCCCATTACCCATTCTTTA
CTTTCCCCTTTCTATTACGCCCCCTGATCTTCCACTCTCCCTCATCCTTC
TCTTATTCTCCCTATTCTTCCCTTTCTCTTTCATTCTGTAATTTTAACCA
CATTTAAC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACGTTTCGGGAAAAAAAAAGTC
AAGCCCAGGCCTCCATCATGAAATGAGTTGTGTGGCAGCCAATATCAATA
CAGCAGCACCTAGGAGGAAAACCTGGGTGTGTCTGTGAGGGCGTCTCTAA
CTTGTGCTCGTTGAAGTGGGAAGTTCCTCTTTTGGGTTGGTGACATCCAT
GCATGGTTTGTCTTGAACTGAATAGGAAAGAGAACGCAAGCGGAACACCA
ACATGAACTGCCTTTTAGCTCTTGTATTGTTGCAATGTGGTGAGTGTCAC
CATGCTGTCCCCGATGGGAAAGACAGATTGCACCCTCCAACTCTGAGCCA
CGGCAAATCCTTCTTTCCTAACGTTCTCTCAATTAGGCATGCTTTCACCG
CCATTTAAAATAGGAAAGCAAGTTGGGACCGAGTATTTTGTCAATTGAAT
CCAAACTTACTCATAACTCACTCTTTTATGGGTATCAAACCTCCTCTGTT
CTAAGCGTCACTCTCTATTTGTCATTTGCTTGCGGAGACAGGACCTTGCT
ATGTGACTCCGTCTGTCCTATAATCTTTCTCCCTATGTACATTTTATATT
TCTCCTCCTGTGTTCTTCTCTCTTGTTAGTCACTCCCTGTTCTTATTTGC
TTCCCCTTCGTATTTTTACTCCCTTTCCACTTATCGTATATCTTTTTCCT
CCCTTTATTTATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_j09.b1 MSMg01no450_j09.b1 CHROMAT_FILE:
MSMg01no450_j09.b1 PHD_FILE: MSMg01no450_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:34 2005
         (118 letters)



>mm_chr10_110739000_110739520
          Length = 521

 Score =  203 bits (105), Expect = 3e-57
 Identities = 116/121 (95%), Gaps = 3/121 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataatttgacagttatctctagtgtagatcacaagtgcttccctgtcactttattgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataatttgacagttatctctagtgtagatcacaagtgcttccctgtcactttattgtgt 260

                                                                       
Query: 61  gtgtagtcataaataaggacagggtcttct---tttagcaactgtaacacccaaaataat 117
           ||||||||||||||||||||||||||||||   ||||| ||||||||||||||||| |||
Sbjct: 261 gtgtagtcataaataaggacagggtcttctccttttagtaactgtaacacccaaaagaat 320

            
Query: 118 g 118
           |
Sbjct: 321 g 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 521
Length adjustment: 8
Effective length of query: 110
Effective length of database: 513
Effective search space:    56430
Effective search space used:    56430
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)